A numerical study of the correspondence between paths in a causal set and geodesics in the continuum

This paper presents the results of a computational study related to the path-geodesic correspondence in causal sets. For intervals in flat spacetimes, and in selected curved spacetimes, we present evidence that the longest maximal chains (the longest paths) in the corresponding causal set intervals statistically approach the geodesic for that interval in the appropriate continuum limit.Comment: To the celebration of the 60th birthday of Rafael D. Sorki

Force and energy dissipation variations in non-contact atomic force spectroscopy on composite carbon nanotube systems

UHV dynamic force and energy dissipation spectroscopy in non-contact atomic force microscopy were used to probe specific interactions with composite systems formed by encapsulating inorganic compounds inside single-walled carbon nanotubes. It is found that forces due to nano-scale van der Waals interaction can be made to decrease by combining an Ag core and a carbon nanotube shell in the Ag@SWNT system. This specific behaviour was attributed to a significantly different effective dielectric function compared to the individual constituents, evaluated using a simple core-shell optical model. Energy dissipation measurements showed that by filling dissipation increases, explained here by softening of C-C bonds resulting in a more deformable nanotube cage. Thus, filled and unfilled nanotubes can be discriminated based on force and dissipation measurements. These findings have two different implications for potential applications: tuning the effective optical properties and tuning the interaction force for molecular absorption by appropriately choosing the filling with respect to the nanotube.Comment: 22 pages, 6 figure

EXAMINATION OF THE GERM CELL CHIMERA FORMING POTENTIAL OF MOUSE EMBRYONIC STEM CELLS

The aim of this study was to examine the factors, which influence the chimeraforming potential of mouse embryonic stem cells (ES cells). In our work, we examinethe chimera producing ability of R1 and R1/E mouse ES cell lines. We found that thepassage number affects chimera-forming capability of the ES cells. With theincreasing of the passage number, it could be getting less chimera animal, and onlythe R1/E ES cell line derived cells could contribute to the germ cells. At first, wecompared the marker of pluripotency using immunostaining and RT PCR, but wecould not find any difference between the R1 and R1/E cell in this way. Atchromosome analysis, we found, that the number of aneuploid cells, in R1 ES cellline, dramatically increased after 10 passages. We thought that the reason is thatduring the cell division Y chromosome could not arrange correctly between the twonewly derived progeny cells. To prove our conception, we made X and YchromosomeFISH analyses. We found, that the aneuploid R1 and R1/E ES cellscontain only one X and one Y chromosome, so not the loss of Y chromosome causethe problem at the germ cell formation. At last, we made the karyotypeanalysis of R1 and R1/E ES cells at different passages. The karyotype analysisdemonstrated that in the case of R1 ES cell line, the 41 and 42-chromosomecontaining cells hold trisomy. With the increasing of the passages number, thenumber of trisomy containing aneuploid cells increased. The aneuploid ES cells cancontribute to the different tissuses of chimera animals, but cannot form viable germcells

Seeds for effective oligonucleotide design

Background: DNA oligonucleotides are a very useful tool in biology. The best algorithms for designing good DNA oligonucleotides are filtering out unsuitable regions using a seeding approach. Determining the quality of the seeds is crucial for the performance of these algorithms.\ud Results: We present a sound framework for evaluating the quality of seeds for oligonucleotide design. The F-score is used to measure the accuracy of each seed. A number of natural candidates are tested: contiguous (BLAST-like), spaced, transitions-constrained, and multiple spaced seeds. Multiple spaced seeds are the best, with more seeds providing better accuracy. Single spaced and transition seeds are very close whereas, as expected, contiguous seeds come last. Increased accuracy comes at the price of reduced efficiency. An exception is that single spaced and transitions-constrained seeds are both more accurate and more efficient than contiguous ones.\ud Conclusions: Our work confirms another application where multiple spaced seeds perform the best. It will be useful in improving the algorithms for oligonucleotide desig

Polarization studies of Rotating Radio Transients

We study the polarization properties of 22 known rotating radio transients (RRATs) with the 64-m Parkes radio telescope and present the Faraday rotation measures (RMs) for the 17 with linearly polarized flux exceeding the off-pulse noise by 3$\sigma$. Each RM was estimated using a brute-force search over trial RMs that spanned the maximum measurable range $\pm1.18 \times 10^5 \, \mathrm{rad \, m^2}$ (in steps of 1 $\mathrm{rad \, m^2}$), followed by an iterative refinement algorithm. The measured RRAT RMs are in the range |RM| $\sim 1$ to $\sim 950$ rad m$^{-2}$ with an average linear polarization fraction of $\sim 40$ per cent. Individual single pulses are observed to be up to 100 per cent linearly polarized. The RMs of the RRATs and the corresponding inferred average magnetic fields (parallel to the line-of-sight and weighted by the free electron density) are observed to be consistent with the Galactic plane pulsar population. Faraday rotation analyses are typically performed on accumulated pulsar data, for which hundreds to thousands of pulses have been integrated, rather than on individual pulses. Therefore, we verified the iterative refinement algorithm by performing Monte Carlo simulations of artificial single pulses over a wide range of S/N and RM. At and above a S/N of 17 in linearly polarized flux, the iterative refinement recovers the simulated RM value 100 per cent of the time with a typical mean uncertainty of $\sim5$ rad m$^{-2}$. The method described and validated here has also been successfully used to determine reliable RMs of several fast radio bursts (FRBs) discovered at Parkes.Comment: Submitted to MNRAS, 10 pages, 6 figure

A Minimal Periods Algorithm with Applications

Kosaraju in ``Computation of squares in a string'' briefly described a linear-time algorithm for computing the minimal squares starting at each position in a word. Using the same construction of suffix trees, we generalize his result and describe in detail how to compute in O(k|w|)-time the minimal k-th power, with period of length larger than s, starting at each position in a word w for arbitrary exponent $k\geq2$ and integer $s\geq0$. We provide the complete proof of correctness of the algorithm, which is somehow not completely clear in Kosaraju's original paper. The algorithm can be used as a sub-routine to detect certain types of pseudo-patterns in words, which is our original intention to study the generalization.Comment: 14 page

Automatic estimation of harmonic tension by distributed representation of chords

The buildup and release of a sense of tension is one of the most essential aspects of the process of listening to music. A veridical computational model of perceived musical tension would be an important ingredient for many music informatics applications. The present paper presents a new approach to modelling harmonic tension based on a distributed representation of chords. The starting hypothesis is that harmonic tension as perceived by human listeners is related, among other things, to the expectedness of harmonic units (chords) in their local harmonic context. We train a word2vec-type neural network to learn a vector space that captures contextual similarity and expectedness, and define a quantitative measure of harmonic tension on top of this. To assess the veridicality of the model, we compare its outputs on a number of well-defined chord classes and cadential contexts to results from pertinent empirical studies in music psychology. Statistical analysis shows that the model's predictions conform very well with empirical evidence obtained from human listeners.Comment: 12 pages, 4 figures. To appear in Proceedings of the 13th International Symposium on Computer Music Multidisciplinary Research (CMMR), Porto, Portuga

Observations of a high‐latitude stable electron auroral emission at ∼16 MLT during a large substorm

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/94792/1/jgra21045.pd

Reducing Remanufacturing Uncertainties with the Digital Product Passport

In contrast to the linear production model, the circular economy aims to close the loop of materials. One part of this approach is remanufacturing, which extends the lifetime of products. Various stakeholders in the supply chain are involved in remanufacturing. This makes the management and optimization of remanufacturing activities complex. The data required for optimization is often missing, which leads to uncertainties. A new European Commission initiative, the digital product passport (DPP), is believed to facilitate information exchange in the supply chain and cloud be a good solution to reduce uncertainties. The primary purpose of this paper is the quantification and evaluation of the advantages of the DPP. Based on real industrial data, a discrete event simulation model of a remanufacturing system with three production lines was developed. The authors suppose the hypothetical existence of a DPP and illustrate the benefits arising from its application