Force and energy dissipation variations in non-contact atomic force spectroscopy on composite carbon nanotube systems

UHV dynamic force and energy dissipation spectroscopy in non-contact atomic force microscopy were used to probe specific interactions with composite systems formed by encapsulating inorganic compounds inside single-walled carbon nanotubes. It is found that forces due to nano-scale van der Waals interaction can be made to decrease by combining an Ag core and a carbon nanotube shell in the Ag@SWNT system. This specific behaviour was attributed to a significantly different effective dielectric function compared to the individual constituents, evaluated using a simple core-shell optical model. Energy dissipation measurements showed that by filling dissipation increases, explained here by softening of C-C bonds resulting in a more deformable nanotube cage. Thus, filled and unfilled nanotubes can be discriminated based on force and dissipation measurements. These findings have two different implications for potential applications: tuning the effective optical properties and tuning the interaction force for molecular absorption by appropriately choosing the filling with respect to the nanotube.Comment: 22 pages, 6 figure

Integrating demography and distribution modeling for the iconic <i>Leontopodium alpinum</i> Colm. in the Romanian Carpathians.

Both climate change and human exploitation are major threats to plant life in mountain environments. One species that may be particularly sensitive to both of these stressors is the iconic alpine flower edelweiss (Leontopodium alpinum Colm.). Its populations have declined across Europe due to over-collection for its highly prized flowers. Edelweiss is still subject to harvesting across the Romanian Carpathians, but no study has measured to what extent populations are vulnerable to anthropogenic change.Here, we estimated the effects of climate and human disturbance on the fitness of edelweiss. We combined demographic measurements with predictions of future range distribution under climate change to assess the viability of populations across Romania.We found that per capita and per-area seed number and seed mass were similarly promoted by both favorable environmental conditions, represented by rugged landscapes with relatively cold winters and wet summers, and reduced exposure to harvesting, represented by the distance of plants from hiking trails. Modeling these responses under future climate scenarios suggested a slight increase in per-area fitness. However, we found plant ranges contracted by between 14% and 35% by 2050, with plants pushed into high elevation sites.Synthesis. Both total seed number and seed mass are expected to decline across Romania despite individual edelweiss fitness benefiting from a warmer and wetter climate. More generally, our approach of coupling species distribution models with demographic measurements may better inform conservation strategies of ways to protect alpine life in a changing world

The attachment of α-synuclein to a fiber:A coarse-grain approach

We present simulations of the amyloidogenic core of α-synuclein, the protein causing Parkinson’s disease, as a short chain of coarse-grain patchy particles. Each particle represents a sequence of about a dozen amino acids. The fluctuating secondary structure of this intrinsically disordered protein is modelled by dynamic variations of the shape and interaction characteristics of the patchy particles, ranging from spherical with weak isotropic attractions for the disordered state to spherocylindrical with strong directional interactions for a β-sheet. Flexible linkers between the particles enable sampling of the tertiary structure. This novel model is applied here to study the growth of an amyloid fibril, by calculating the free energy profile of a protein attaching to the end of a fibril. The simulation results suggest that the attaching protein readily becomes trapped in a mis-folded state, thereby inhibiting further growth of the fibril until the protein has readjusted to conform to the fibril structure, in line with experimental findings and previous simulations on small fragments of other proteins

Evidence for shape coexistence in 98^{98}Mo

A $\gamma\gamma$ angular correlation experiment has been performed to investigate the low-energy states of the nucleus $^{98}$Mo. The new data, including spin assignments, multipole mixing ratios and lifetimes reveal evidence for shape coexistence and mixing in $^{98}$Mo, arising from a proton intruder configuration. This result is reproduced by a theoretical calculation within the proton-neutron interacting boson model with configuration mixing, based on microscopic energy density functional theory. The microscopic calculation indicates the importance of the proton particle-hole excitation across the Z=40 sub-shell closure and the subsequent mixing between spherical vibrational and the $\gamma$-soft equilibrium shapes in $^{98}$Mo.Comment: 6 pages, 5 figures, 3 tables; published in Phys. Rev.

Plasma properties of superstorms at geosynchronous orbit: How different are they?

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/94769/1/grl23868.pd

A Minimal Periods Algorithm with Applications

Kosaraju in ``Computation of squares in a string'' briefly described a linear-time algorithm for computing the minimal squares starting at each position in a word. Using the same construction of suffix trees, we generalize his result and describe in detail how to compute in O(k|w|)-time the minimal k-th power, with period of length larger than s, starting at each position in a word w for arbitrary exponent $k\geq2$ and integer $s\geq0$. We provide the complete proof of correctness of the algorithm, which is somehow not completely clear in Kosaraju's original paper. The algorithm can be used as a sub-routine to detect certain types of pseudo-patterns in words, which is our original intention to study the generalization.Comment: 14 page

Seeds for effective oligonucleotide design

Background: DNA oligonucleotides are a very useful tool in biology. The best algorithms for designing good DNA oligonucleotides are filtering out unsuitable regions using a seeding approach. Determining the quality of the seeds is crucial for the performance of these algorithms.\ud Results: We present a sound framework for evaluating the quality of seeds for oligonucleotide design. The F-score is used to measure the accuracy of each seed. A number of natural candidates are tested: contiguous (BLAST-like), spaced, transitions-constrained, and multiple spaced seeds. Multiple spaced seeds are the best, with more seeds providing better accuracy. Single spaced and transition seeds are very close whereas, as expected, contiguous seeds come last. Increased accuracy comes at the price of reduced efficiency. An exception is that single spaced and transitions-constrained seeds are both more accurate and more efficient than contiguous ones.\ud Conclusions: Our work confirms another application where multiple spaced seeds perform the best. It will be useful in improving the algorithms for oligonucleotide desig

Thermomechanical and Microstructural Analysis of the Influence of B- and Ti-Content on the Hot Ductility Behavior of Microalloyed Steels

The effects of the combined addition of B and Ti, as well as the influence of different strain rates on the hot ductility behavior of low carbon, continuously cast, microalloyed steels were investigated in this work. Tensile tests, microstructure analyses, and thermokinetic simulations were performed with in situ melted samples. Furthermore, prior austenite grain evaluations were carried out for the two different microalloyed steels. Increasing the strain rate brought improvements to the ductility, which was more significant in the steel with the leanest composition. The steel containing more B and Ti presented a better hot ductility behavior under all conditions tested. The main causes for the improvements rely on the precipitation behavior and the austenite–ferrite phase transformation. The preferential formation of TiN instead of fine BN and AlN was seen to be beneficial to the ductility, as well as the absence of MnS. Grain boundary segregation of free B that did not form BN retarded the ferrite formation, avoiding the brittleness brought by the thin ferrite films at the austenite grain boundaries. Furthermore, it was revealed that for the steels in question, the prior austenite grains have less influence on the hot ductility behavior than the precipitates and ferrite formation

Words with the Maximum Number of Abelian Squares

An abelian square is the concatenation of two words that are anagrams of one another. A word of length $n$ can contain $\Theta(n^2)$ distinct factors that are abelian squares. We study infinite words such that the number of abelian square factors of length $n$ grows quadratically with $n$.Comment: To appear in the proceedings of WORDS 201

Geomagnetic disturbance intensity dependence on the universal timing of the storm peak

The role of universal time (UT) dependence on storm time development has remained an unresolved question in geospace research. This study presents new insight into storm progression in terms of the UT of the storm peak. We present a superposed epoch analysis of solar wind drivers and geomagnetic index responses during magnetic storms, categorized as a function of UT of the storm peak, to investigate the dependency of storm intensity on UT. Storms with Dst minimum less than −100 nT were identified in the 1970–2012 era (305 events), covering four solar cycles. The storms were classified into six groups based on the UT of the minimum Dst (40 to 61 events per bin) then each grouping was superposed on a timeline that aligns the time of the minimum Dst. Fifteen different quantities were considered: seven solar wind parameters and eight activity indices derived from ground‐based magnetometer data. Statistical analyses of the superposed means against each other (between the different UT groupings) were conducted to determine the mathematical significance of similarities and differences in the time series plots. It was found that the solar wind parameters have no significant difference between the UT groupings, as expected. The geomagnetic activity indices, however, all show statistically significant differences with UT during the main phase and/or early recovery phase. Specifically, the 02:00 UT groupings are stronger storms than those in the other UT bins. That is, storms are stronger when the Asian sector is on the nightside (American sector on the dayside) during the main phase.Key PointsWe statistically examine storm time solar wind and geophysical data as a function of UT of the storm peakThere is a significant UT dependence to large storms; larger storms occur with a peak near 02:00 UTThe difference in storm magnitude is caused by substorm activity and not by solar wind drivingPeer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/134203/1/jgra52755.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/134203/2/jgra52755_am.pd