Atwood ratio dependence of Richtmyer-Meshkov flows under reshock conditions using large-eddy simulations

We study the shock-driven turbulent mixing that occurs when a perturbed planar density interface is impacted by a planar shock wave of moderate strength and subsequently reshocked. The present work is a systematic study of the influence of the relative molecular weights of the gases in the form of the initial Atwood ratio A. We investigate the cases A = ± 0.21, ±0.67 and ±0.87 that correspond to the realistic gas combinations air–CO_2, air–SF_6 and H_2–air. A canonical, three-dimensional numerical experiment, using the large-eddy simulation technique with an explicit subgrid model, reproduces the interaction within a shock tube with an endwall where the incident shock Mach number is ~1.5 and the initial interface perturbation has a fixed dominant wavelength and a fixed amplitude-to-wavelength ratio ~0.1. For positive Atwood configurations, the reshock is followed by secondary waves in the form of alternate expansion and compression waves travelling between the endwall and the mixing zone. These reverberations are shown to intensify turbulent kinetic energy and dissipation across the mixing zone. In contrast, negative Atwood number configurations produce multiple secondary reshocks following the primary reshock, and their effect on the mixing region is less pronounced. As the magnitude of A is increased, the mixing zone tends to evolve less symmetrically. The mixing zone growth rate following the primary reshock approaches a linear evolution prior to the secondary wave interactions. When considering the full range of examined Atwood numbers, measurements of this growth rate do not agree well with predictions of existing analytic reshock models such as the model by Mikaelian (Physica D, vol. 36, 1989, p. 343). Accordingly, we propose an empirical formula and also a semi-analytical, impulsive model based on a diffuse-interface approach to describe the A-dependence of the post-reshock growth rate

A low-numerical dissipation, patch-based adaptive-mesh-refinement method for large-eddy simulation of compressible flows

This paper describes a hybrid finite-difference method for the large-eddy simulation of compressible flows with low-numerical dissipation and structured adaptive mesh refinement (SAMR). A conservative flux-based approach is described with an explicit centered scheme used in turbulent flow regions while a weighted essentially non-oscillatory (WENO) scheme is employed to capture shocks. Three-dimensional numerical simulations of a Richtmyer-Meshkov instability are presented

Monte Carlo tomographic reconstruction in SPECT impact of bootstrapping and number of generated events

In Single Photon Emission Computed Tomography (SPECT), 3D images usually reconstructed by performing a set of bidimensional (2D) analytical or iterative reconstructions can also be reconstructed using an iterative reconstruction algorithm involving a 3D projector. Accurate Monte Carlo (MC) simulations modeling all the physical effects that affect the imaging process can be used to estimate this projector. However, the accuracy of the projector is affected by the stochastic nature of MC simulations. In this paper, we study the accuracy of the reconstructed images with respect to the number of simulated histories used to estimate the MC projector. Furthermore, we study the impact of applying the bootstrapping technique when estimating the projectorComment: 15 pages, 9 figures, 2 table

Generalized Haldane Equation and Fluctuation Theorem in the Steady State Cycle Kinetics of Single Enzymes

Enyzme kinetics are cyclic. We study a Markov renewal process model of single-enzyme turnover in nonequilibrium steady-state (NESS) with sustained concentrations for substrates and products. We show that the forward and backward cycle times have idential non-exponential distributions: \QQ_+(t)=\QQ_-(t). This equation generalizes the Haldane relation in reversible enzyme kinetics. In terms of the probabilities for the forward ($p_+$) and backward ($p_-$) cycles, $k_BT\ln(p_+/p_-)$ is shown to be the chemical driving force of the NESS, $\Delta\mu$. More interestingly, the moment generating function of the stochastic number of substrate cycle $\nu(t)$, follows the fluctuation theorem in the form of Kurchan-Lebowitz-Spohn-type symmetry. When $\lambda$ = $\Delta\mu/k_BT$, we obtain the Jarzynski-Hatano-Sasa-type equality: $\equiv$ 1 for all $t$, where $\nu\Delta\mu$ is the fluctuating chemical work done for sustaining the NESS. This theory suggests possible methods to experimentally determine the nonequilibrium driving force {\it in situ} from turnover data via single-molecule enzymology.Comment: 4 pages, 3 figure

Deformation Energy Minima at Finite Mass Asymmetry

A very general saddle point nuclear shape may be found as a solution of an integro-differential equation without giving apriori any shape parametrization. By introducing phenomenological shell corrections one obtains minima of deformation energy for binary fission of parent nuclei at a finite (non-zero) mass asymmetry. Results are presented for reflection asymmetric saddle point shapes of thorium and uranium even-mass isotopes with A=226-238 and A=230-238 respectively.Comment: 5 pages, 2 Postscript figures, REVTeX, Version 4.

Avicennia germinans (L.) Stearn

https://thekeep.eiu.edu/herbarium_specimens_byname/18928/thumbnail.jp

Unifying thermodynamic and kinetic descriptions of single-molecule processes: RNA unfolding under tension

We use mesoscopic non-equilibrium thermodynamics theory to describe RNA unfolding under tension. The theory introduces reaction coordinates, characterizing a continuum of states for each bond in the molecule. The unfolding considered is so slow that one can assume local equilibrium in the space of the reaction coordinates. In the quasi-stationary limit of high sequential barriers, our theory yields the master equation of a recently proposed sequential-step model. Non-linear switching kinetics is found between open and closed states. Our theory unifies the thermodynamic and kinetic descriptions and offers a systematic procedure to characterize the dynamics of the unfolding processComment: 13 pages, 3 figure