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Asparagus cochinchinensis Merr.

原著和名: クサスギカヅラ科名: ユリ科 = Liliaceae採集地: 千葉県 君津郡 浜金谷海浜 (千葉県 浜金谷海浜)採集日: 1948/9/26採集者: 萩庭丈壽整理番号: JH043062国立科学博物館整理番号: TNS-VS-99306

Additional file 5: Figure S2. of GiniClust: detecting rare cell types from single-cell gene expression data with Gini index

Comparison of GiniClust and RaceID on the simulated dataset. (A–C) Projection of the simulated data on various principal components; (D) GiniClust identified clusters; (E) decomposition of each simulated rare cluster into GiniClust clusters; (F) RaceID identified clusters; (G) decomposition of each simulated rare cluster into RaceID clusters. (PDF 16879 kb

Additional file 12: of Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing

Table S11. List of GO terms used in Additional file 1: Figure S4. (XLSX 73 kb

Additional file 1: of Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing

Figure S1. Quality control of the dataset. Figure S2. Surface marker analysis and GO enrichment analysis of lineage progenitors. Figure S3. FeaturePlot of specific genes from neural and muscle sub-clusters. Figure S4. Differentiation trajectories and GO analysis of neural and muscle sub-clusters. Figure S5. GO analysis and expression dynamics of gene clusters I–VI. Figure S6. Network of potential cell–cell interactions in EBs. Figure S7. Signaling pathways involved in differentiation of various progenitor cells. Figure S8. The identification of Naïve-like H9. Figure S9. Surface marker analysis and GO analysis of Primed and Naïve-like H9. Figure S10. The identification and GO analysis of Primed and Naïve-like H1 (Additional file 11: Table S10, Additional file 12: Table S11, Additional file 13: Table S12, Additional file 14: Table S13, Additional file 15: Table S14). (DOCX 19207 kb

Additional file 5: of Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing

Table S4. List of genes used in Fig. 3a and c for heatmap. (XLSX 99 kb

Additional file 8: of Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing

Table S7. List of genes used in Fig. 5b for heatmaps. (XLSX 43 kb

Additional file 11: of Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing

Table S10. List of GO terms used in Additional file 1: Figure S2. (XLSX 64 kb

Additional file 6: of Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing

Table S5. List of genes used in Fig. 4b for heatmap. (XLSX 38 kb

Additional file 14: of Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing

Table S13. List of signaling pathways used in Additional file 1: Figure S7a. (XLSX 20 kb