The Jena Library of Biological Macromolecules - JenaLib

The JenaLib database ("www.fli-leibniz.de/IMAGE.html":http://www.fli-leibniz.de/IMAGE.html) offers value-added information for all Protein Data Bank (PDB) and Nucleic Acid Database (NDB) entries. This includes:
(1) atlas pages and entry lists, (2) PDB sequence information extracted from atomic coordinates, (3) PDB/UniProt sequence alignments that clearly indicate gaps, mutations, numbering irregularities and modified residues, (4) integration of data on single amino acid polymorphisms (SAPs), PROSITE motifs, exon structure and SCOP/CATH/Pfam domains with PDB, GO and taxonomy information, (5) display of these data in the sequence/alignment viewer and in the Jmol-based molecule viewer Jena3D ("jena3d.fli-leibniz.de":http://jena3d.fli-leibniz.de ); in the latter case both for asymmetric and biological units, (6) a QuickSearch option that allows searching for PDB/NDB code, UniProt ID/accession number and other search terms in one input field, (7) a sequence homology search (BLAST) and pattern search options and (8) SCOP/CATH/Pfam tree browsers.

Offering all this information and analysis tools in one place makes JenaLib a unique resource for the dissemination of 3D structural information on biological macromolecules

Mining and developing nations: does mining contribute to socioeconomic development?

The hypothesis that an active mining industry results in decreased economic benefits to developing countries has often been supported by the theory commonly referred to as the Resource Curse. Data from the World Bank provides some support to the argument that there is a negative relationship between natural resource exploitation and economic development, but more recently it appears this relationship does not hold true. With the advent of corporate social responsibility and sustainable development there is increasing evidence that affirms an alternate hypothesis; that an active mining industry results in increased socioeconomic benefits to developing countries. In order to test this hypothesis this study relies on analysis of macroeconomic data primarily obtained from the World Bank, and in order to analyse measures relating to social development and welfare, examination of alternative measures using the United Nations’ Human Development Index and Millennium Development Goals. Investigation, using a sub-group of sub-Saharan developing countries as the sample selection, supports the alternative hypothesis

Scaling behaviour of the critical current in clean epitaxial Ba(Fe1-xCox)2As2 thin films

The angular-dependent critical current density, Jc(theta), and the upper critical field, Hc2(theta), of epitaxial Ba(Fe1-xCox)2As2 thin films have been investigated. No Jc(theta) peaks for H || c were observed regardless of temperatures and magnetic fields. In contrast, Jc(theta) showed a broad maximum at theta=90 degree, which arises from intrinsic pinning. All data except at theta=90 degree can be scaled by the Blatter plot. Hc2(theta) near Tc follows the anisotropic Ginzburg-Landau expression. The mass anisotropy increased from 1.5 to 2 with increasing temperature, which is an evidence for multi-band superconductivity.Comment: Accepted in Physical Review B rapid communication

Influenced of Fe buffer thickness on the crystalline quality and the transport properties of Fe/Ba(Fe1-xCox)2As2 bilayers

The implementation of an Fe buffer layer is a promising way to obtain epitaxial growth of Co-doped BaFe2As2 (Ba-122). However, the crystalline quality and the superconducting properties of Co-doped Ba-122 are influenced by the Fe buffer layer thickness, dFe. The well-textured growth of the Fe/Ba-122 bilayer with dFe = 15 nm results in a high Jc of 0.45 MAcm$^{-2}$ at 12 K in self-field, whereas a low Jc value of 61000 Acm$^{-2}$ is recorded for the bilayer with dFe = 4 nm at the corresponding reduced temperature due to the presence of grain boundaries

The superconducting gaps in FeSe studied by soft point-contact Andreev reflection spectroscopy

FeSe single crystals have been studied by soft point-contact Andreev-reflection spectroscopy. Superconducting gap features in the differential resistance dV/dI(V) of point contacts such as a characteristic Andreev-reflection double-minimum structure have been measured versus temperature and magnetic field. Analyzing dV/dI within the extended two-gap Blonder-Tinkham-Klapwijk model allows to extract both the temperature and magnetic field dependence of the superconducting gaps. The temperature dependence of both gaps is close to the standard BCS behavior. Remarkably, the magnitude of the double-minimum structure gradually vanishes in magnetic field, while the minima position only slightly shifts with field indicating a weak decrease of the superconducting gaps. Analyzing the dV/dI(V) spectra for 25 point contacts results in the averaged gap values = 1.8+/-0.4meV and =1.0+/-0.2 meV and reduced values 2/kTc=4.2+/-0.9 and 2/kTc=2.3+/-0.5 for the large (L) and small (S) gap, respectively. Additionally, the small gap contribution was found to be within tens of percent decreasing with both temperature and magnetic field. No signatures in the dV/dI spectra were observed testifying a gapless superconductivity or presence of even smaller gaps.Comment: 8 pages, 4 figs., 3 tables. Shortened version without fig.4 and Table 3 is accepted for publication in Phys. Rev.