Cosmological Parameters from the Comparison of the 2MASS Gravity Field with Peculiar Velocity Surveys

We compare the peculiar velocity field within 65 $h^{-1}$ Mpc predicted from 2MASS photometry and public redshift data to three independent peculiar velocity surveys based on type Ia supernovae, surface brightness fluctuations in ellipticals, and Tully-Fisher distances to spirals. The three peculiar velocity samples are each in good agreement with the predicted velocities and produce consistent results for \beta_{K}=\Omega\sbr{m}^{0.6}/b_{K}. Taken together the best fit $\beta_{K} = 0.49 \pm 0.04$. We explore the effects of morphology on the determination of $\beta$ by splitting the 2MASS sample into E+S0 and S+Irr density fields and find both samples are equally good tracers of the underlying dark matter distribution, but that early-types are more clustered by a relative factor b\sbr{E}/b\sbr{S} \sim 1.6. The density fluctuations of 2MASS galaxies in $8 h^{-1}$ Mpc spheres in the local volume is found to be \sigma\sbr{8,K} = 0.9. From this result and our value of $\beta_{K}$, we find \sigma_8 (\Omega\sbr{m}/0.3)^{0.6} = 0.91\pm0.12. This is in excellent agreement with results from the IRAS redshift surveys, as well as other cosmological probes. Combining the 2MASS and IRAS peculiar velocity results yields \sigma_8 (\Omega\sbr{m}^/0.3)^{0.6} = 0.85\pm0.05.Comment: 11 pages, ApJ accepte

Nonaxisymmetric, multi-region relaxed magnetohydrodynamic equilibrium solutions

We describe a magnetohydrodynamic (MHD) constrained energy functional for equilibrium calculations that combines the topological constraints of ideal MHD with elements of Taylor relaxation. Extremizing states allow for partially chaotic magnetic fields and non-trivial pressure profiles supported by a discrete set of ideal interfaces with irrational rotational transforms. Numerical solutions are computed using the Stepped Pressure Equilibrium Code, SPEC, and benchmarks and convergence calculations are presented.Comment: Submitted to Plasma Physics and Controlled Fusion for publication with a cluster of papers associated with workshop: Stability and Nonlinear Dynamics of Plasmas, October 31, 2009 Atlanta, GA on occasion of 65th birthday of R.L. Dewar. V2 is revised for referee

Gene-history correlation and population structure

Correlation of gene histories in the human genome determines the patterns of genetic variation (haplotype structure) and is crucial to understanding genetic factors in common diseases. We derive closed analytical expressions for the correlation of gene histories in established demographic models for genetic evolution and show how to extend the analysis to more realistic (but more complicated) models of demographic structure. We identify two contributions to the correlation of gene histories in divergent populations: linkage disequilibrium, and differences in the demographic history of individuals in the sample. These two factors contribute to correlations at different length scales: the former at small, and the latter at large scales. We show that recent mixing events in divergent populations limit the range of correlations and compare our findings to empirical results on the correlation of gene histories in the human genome.Comment: Revised and extended version: 26 pages, 5 figures, 1 tabl

Hamilton--Jacobi theory for continuation of magnetic field across a toroidal surface supporting a plasma pressure discontinuity

The vanishing of the divergence of the total stress tensor (magnetic plus kinetic) in a neighborhood of an equilibrium plasma containing a toroidal surface of discontinuity gives boundary and jump conditions that strongly constrain allowable continuations of the magnetic field across the surface. The boundary conditions allow the magnetic fields on either side of the discontinuity surface to be described by surface magnetic potentials, reducing the continuation problem to that of solving a Hamilton--Jacobi equation. The characteristics of this equation obey Hamiltonian equations of motion, and a necessary condition for the existence of a continued field across a general toroidal surface is that there exist invariant tori in the phase space of this Hamiltonian system. It is argued from the Birkhoff theorem that existence of such an invariant torus is also, in general, sufficient for continuation to be possible. An important corollary is that the rotational transform of the continued field on a surface of discontinuity must, generically, be irrational.Comment: Prepared for submission to Phys. Letts.

Generalised action-angle coordinates defined on island chains

Straight-field-line coordinates are very useful for representing magnetic fields in toroidally confined plasmas, but fundamental problems arise regarding their definition in 3-D geometries because of the formation of islands and chaotic field regions, ie non-integrability. In Hamiltonian dynamical systems terms these coordinates are a form of action-angle variables, which are normally defined only for integrable systems. In order to describe 3-D magnetic field systems, a generalisation of this concept was proposed recently by the present authors that unified the concepts of ghost surfaces and quadratic-flux-minimising (QFMin) surfaces. This was based on a simple canonical transformation generated by a change of variable $\theta = \theta(\Theta,\zeta)$, where $\theta$ and $\zeta$ are poloidal and toroidal angles, respectively, with $\Theta$ a new poloidal angle chosen to give pseudo-orbits that are a) straight when plotted in the $\zeta,\Theta$ plane and b) QFMin pseudo-orbits in the transformed coordinate. These two requirements ensure that the pseudo-orbits are also c) ghost pseudo-orbits. In the present paper, it is demonstrated that these requirements do not \emph{uniquely} specify the transformation owing to a relabelling symmetry. A variational method of solution that removes this lack of uniqueness is proposed.Comment: 10 pages. Accepted by Plasma Physics and Controlled Fusion as part of a cluster of refereed papers in a special issue containing papers arising from the Joint International Stellarator & Heliotron Workshop and Asia-Pacific Plasma Theory Conference, held in Canberra and Murramarang Resort, Australia, 30 January - 3 February, 201

Mapping for the Masses: Accessing Web 2.0 through Crowdsourcing

The authors describe how we are harnessing the power of web 2.0 technologies to create new approaches to collecting, mapping, and sharing geocoded data. The authors begin with GMapCreator that lets users fashion new maps using Google Maps as a base. The authors then describe MapTube that enables users to archive maps and demonstrate how it can be used in a variety of contexts to share map information, to put existing maps into a form that can be shared, and to create new maps from the bottom-up using a combination of crowdcasting, crowdsourcing, and traditional broadcasting. The authors conclude by arguing that such tools are helping to define a neogeography that is essentially "mapping for the masses,'' while noting that there are many issues of quality, accuracy, copyright, and trust that will influence the impact of these tools on map-based communication

Galaxy Distances in the Nearby Universe: Corrections For Peculiar Motions

By correcting the redshift--dependent distances for peculiar motions through a number of peculiar velocity field models, we recover the true distances of a wide, all-sky sample of nearby galaxies (~ 6400 galaxies with velocities cz<5500 km/s), which is complete up to the blue magnitude B=14 mag. Relying on catalogs of galaxy groups, we treat ~2700 objects as members of galaxy groups and the remaining objects as field galaxies. We model the peculiar velocity field using: i) a cluster dipole reconstruction scheme; ii) a multi--attractor model fitted to the Mark II and Mark III catalogs of galaxy peculiar velocities. According to Mark III data the Great Attractor has a smaller influence on local dynamics than previously believed, whereas the Perseus-Pisces and Shapley superclusters acquire a specific dynamical role. Remarkably, the Shapley structure, which is found to account for nearly half the peculiar motion of the Local Group, is placed by Mark III data closer to the zone of avoidance with respect to its optical position. Our multi--attractor model based on Mark III data favors a cosmological density parameter Omega ~ 0.5 (irrespective of a biasing factor of order unity). Differences among distance estimates are less pronounced in the ~ 2000 - 4000 km/s distance range than at larger or smaller distances. In the last regions these differences have a serious impact on the 3D maps of the galaxy distribution and on the local galaxy density --- on small scales.Comment: 24 pages including (9 eps figures and 7 tables). Figures 1,2,3,4 are available only upon request. Accepted by Ap