Furnishing Sound Event Detection with Language Model Abilities

Recently, the ability of language models (LMs) has attracted increasing attention in visual cross-modality. In this paper, we further explore the generation capacity of LMs for sound event detection (SED), beyond the visual domain. Specifically, we propose an elegant method that aligns audio features and text features to accomplish sound event classification and temporal location. The framework consists of an acoustic encoder, a contrastive module that align the corresponding representations of the text and audio, and a decoupled language decoder that generates temporal and event sequences from the audio characteristic. Compared with conventional works that require complicated processing and barely utilize limited audio features, our model is more concise and comprehensive since language model directly leverage its semantic capabilities to generate the sequences. We investigate different decoupling modules to demonstrate the effectiveness for timestamps capture and event classification. Evaluation results show that the proposed method achieves accurate sequences of sound event detection.Comment: 8 pages,2 figures,published to AAA

Relationship between leaf physiologic traits and canopy color indices during the leaf expansion period in an oak forest

© The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecosphere 6, no. 12 (2015): 1-9, doi:10.1890/ES14-00452.1.Plant phenology has a significant impact on the forest ecosystem carbon balance. Detecting plant phenology by capturing the time-series canopy images through digital camera has become popular in recent years. However, the relationship between color indices derived from camera images and plant physiological characters are elusive during the growing season in temperate ecosystems. We collected continuous images of forest canopy, leaf size, leaf area index (LAI) and leaf chlorophyll measured by a soil plant analysis development (SPAD) analyzer in a northern subtropical oak forest in China. Our results show that (1) the spring peak of color indices, Gcc (Green Chromatic Coordinates) and ExG (Excess Green), was 18 days earlier than the 90% maximum SPAD value; (2) the 90% maximum SPAD value coincided with the change point of Gcc and ExG immediately after their spring peak; and (3) the spring curves of Gcc and ExG before their peaks were highly synchronous with the expansion of leaf size and the development of LAI value. We suggest it needs to be adjusted if camera-derived Gcc or ExG is used as a proxy of chlorophyll or gross primary productivity, and images observation should be complemented with field phenological and physiological information to interpret the physiological meaning of leaf seasonality.This research was funded by the Priority Academic Program Development of Jiangsu Higher Education Institutions in the Discipline of Environmental Science and Engineering at Nanjing Forest University, Changjiang River Delta Urban Forest Ecosystem Research of CFERN (to H. Hu) and Brown University Seed Funds for International Research Projects on the Environment (to J. Tang)

Synthesis and Properties of La1−x_{1-x}Srx_xNiO3_3 and La1−x_{1-x}Srx_xNiO2_2

Superconductivity has been realized in films of La$_{1-x}$Sr$_x$NiO$_2$. Here we report synthesis and characterization of polycrystalline samples of La$_{1-x}$Sr$_x$NiO$_3$ and La$_{1-x}$Sr$_x$NiO$_2$ ($0\le x\le 0.2$). Magnetization and resistivity measurements reveal that La$_{1-x}$Sr$_x$NiO$_3$ are paramagnetic metals and La$_{1-x}$Sr$_x$NiO$_2$ exhibit insulating behavior. Superconductivity is not detected in bulk samples of La$_{1-x}$Sr$_x$NiO$_2$. The absence of superconductivity in bulk La$_{1-x}$Sr$_x$NiO$_2$ may be due to the generation of hydroxide during reduction or a small amount of nickel impurities. The effect of interface in films of La$_{1-x}$Sr$_x$NiO$_2$ may also play a role for superconductivity.Comment: 9 pages, 4 figure

Tulp1 deficiency causes early-onset retinal degeneration through affecting ciliogenesis and activating ferroptosis in zebrafish

Mutations in TUB-like protein 1 (TULP1) are associated with severe early-onset retinal degeneration in humans. However, the pathogenesis remains largely unknown. There are two homologous genes of TULP1 in zebrafish, namely tulp1a and tulp1b. Here, we generated the single knockout (tulp1a(−/−) and tulp1b(−/−)) and double knockout (tulp1-dKO) models in zebrafish. Knockout of tulp1a resulted in the mislocalization of UV cone opsins and the degeneration of UV cones specifically, while knockout of tulp1b resulted in mislocalization of rod opsins and rod-cone degeneration. In the tulp1-dKO zebrafish, mislocalization of opsins was present in all types of photoreceptors, and severe degeneration was observed at a very early age, mimicking the clinical manifestations of TULP1 patients. Photoreceptor cilium length was significantly reduced in the tulp1-dKO retinas. RNA-seq analysis showed that the expression of tektin2 (tekt2), a ciliary and flagellar microtubule structural component, was downregulated in the tulp1-dKO zebrafish. Dual-luciferase reporter assay suggested that Tulp1a and Tulp1b transcriptionally activate the promoter of tekt2. In addition, ferroptosis might be activated in the tulp1-dKO zebrafish, as suggested by the up-regulation of genes related to the ferroptosis pathway, the shrinkage of mitochondria, reduction or disappearance of mitochondria cristae, and the iron and lipid droplet deposition in the retina of tulp1-dKO zebrafish. In conclusion, our study establishes an appropriate zebrafish model for TULP1-associated retinal degeneration and proposes that loss of TULP1 causes defects in cilia structure and opsin trafficking through the downregulation of tekt2, which further increases the death of photoreceptors via ferroptosis. These findings offer insight into the pathogenesis and clinical treatment of early-onset retinal degeneration

Single crystal growth and superconductivity in RbNi2_2Se2_2

We report the synthesis and characterization of RbNi$_2$Se$_2$, an analog of the iron chalcogenide superconductor Rb$_x$Fe$_2$Se$_2$, via transport, angle resolved photoemission spectroscopy, and density functional theory calculations. A superconducting transition at $T_{c}$ = 1.20 K is identified. In normal state, RbNi$_2$Se$_2$ shows paramagnetic and Fermi liquid behaviors. A large Sommerfeld coefficient yields a heavy effective electron mass of $m^{*}\approx6m_{e}$. In the superconducting state, zero-field electronic specific-heat data $C_{es}$ can be described by a two-gap BCS model, indicating that RbNi$_2$Se$_2$ is a multi-gap superconductor. Our density functional theory calculations and angle resolved photoemission spectroscopy measurements demonstrate that RbNi$_2$Se$_2$ exhibits relatively weak correlations and multi-band characteristics, consistent with the multi-gap superconductivity.Comment: 7 pages, 4 figure

Structural, magnetic, and electronic evolution of the spin-ladder system BaFe2_2S3−x_{3-x}Sex_x with isoelectronic substitution

We report experimental studies of a series of BaFe$_2$S$_{3-x}$Se$_x$ ($0\leq x\leq3$) single crystals and powder specimens using x-ray diffraction, neutron diffraction, muon spin relaxation, and electrical transport measurements. A structural transformation from Cmcm (BaFe$_2$S$_3$) to Pnma (BaFe$_2$Se$_3$) was identified around $x = 0.7\sim 1$. Neutron diffraction measurements on the samples with $x$ = 0.2, 0.4, and 0.7 reveal that the N$\'{e}$el temperature of the stripe antiferromagnetic order is gradually suppressed from $\sim$120 to 85 K, while the magnitude of the ordered Fe$^{2+}$ moments shows very little variation. Similarly, the block antiferromagnetic order in BaFe$_2$Se$_3$ remains robust for $1.5\leq x\leq3$ with negligible variation in the ordered moment and a slight decrease of the N$\'{e}$el temperature from 250 K ($x=3$) to 225 K ($x=1.5$). The sample with $x=1$ near the Cmcm and Pnma border shows coexisting, two-dimensional, short-range stripe- and block-type antiferromagnetic correlations. The system remains insulating for all $x$, but the thermal activation gap shows an abrupt increase when traversing the boundary from the Cmcm stripe phase to the Pnma block phase. The results demonstrate that the crystal structure, magnetic order, and electronic properties are strongly coupled in the BaFe$_2$S$_{3-x}$Se$_x$ system.Comment: 16 pages, 8 figure

The splicing factor DHX38 enables retinal development through safeguarding genome integrity

DEAH-Box Helicase 38 (DHX38) is a pre-mRNA splicing factor and also a disease-causing gene of autosomal recessive retinitis pigmentosa (arRP). The role of DHX38 in the development and maintenance of the retina remains largely unknown. In this study, by using the dhx38 knockout zebrafish model, wedemonstrated that Dhx38 deficiency causes severe differentiation defects and apoptosis of retinal progenitor cells (RPCs) through disrupted mitosis and increased DNA damage. Furthermore, we found a significant accumulation of R-loops in the dhx38-deficient RPCs and human cell lines. Finally, we found that DNA replication stress is the prerequisite for R-loop-induced DNA damage in the DHX38 knockdown cells. Taken together, our study demonstrates a necessary role of DHX38 in the development of retina and reveals a DHX38/R-loop/replication stress/DNA damage regulatory axis that is relatively independent of the known functions of DHX38 in mitosis control

Rapid and Visual Detection of Monkey B Virus Based on Recombinase Polymerase Amplification

Monkey B virus (BV) infection in humans and other macaque species has a mortality rate of approximately 80%. Because BV infects humans through bites, scratches, and other injuries inflicted by macaques, the simple and rapid diagnosis of BV in field laboratories is of great importance to protect veterinarians, laboratory researchers, and support personnels from the threat of infection. Two recombinase polymerase amplification (RPA) assays with a closed vertical flow (VF) visualization strip (RPA-VF-UL27 and RPA-VF-US6) were developed that target two conserved genes combined with a one-off, closed visualization strip device. We compared the sensitivities and specificities of the two assays after optimization of the reaction conditions. The performance of RPA-VF-US6 at room temperature was determined to evaluate its potential in point-of-care (POC) testing. RPA-VF-US6 specifically detected the positive plasmid control (rather than nucleic acids of herpesviruses) with a detection limit of 28 copies, while RPA-VF-UL27 had cross-reactivity with HSV-1, but even 3.4 copies of plasmid standards were readout by this assay. Moreover, RPA-VF-US6 had excellent performance at room temperature (the detection limit was 2,800 plasmid copies), indicating the potential of RPA-VF-US6 in POC testing. We developed two RPA assays for BV visualization diagnosis. RPA-VF-US6 is a simple, rapid, and specific detection method for BV. The entire reaction can be performed at a constant temperature within 30 min, suggesting the potential of RPA-VF-US6 for POC testing in field laboratories without sophisticated instruments