Functional Categories of up-regulated and down-regulated genes in panicles, leaves, and roots

<p><b>Copyright information:</b></p><p>Taken from "Differential gene expression in an elite hybrid rice cultivar () and its parental lines based on SAGE data"</p><p>http://www.biomedcentral.com/1471-2229/7/49</p><p>BMC Plant Biology 2007;7():49-49.</p><p>Published online 19 Sep 2007</p><p>PMCID:PMC2077334.</p><p></p

Differential gene expression in an elite hybrid rice cultivar () and its parental lines based on SAGE data-4

<p><b>Copyright information:</b></p><p>Taken from "Differential gene expression in an elite hybrid rice cultivar () and its parental lines based on SAGE data"</p><p>http://www.biomedcentral.com/1471-2229/7/49</p><p>BMC Plant Biology 2007;7():49-49.</p><p>Published online 19 Sep 2007</p><p>PMCID:PMC2077334.</p><p></p>ion, glycolic acid oxidation, and fatty acid β-oxdidation pathways are shown. The enzymes (denotes key or rate-limiting enzymes) are: E1, fructose-1,6-bisphosphatase; E2, fructose-bisphosphate aldolase; E3, glyceraldehyde 3-phosphate dehydrogenase; E4, phosphoglycerate kinase; E5, pyruvate kinase; E6, alcohol dehydrogenase; E7, catalase; E8, acyl-CoA dehydrogenase; E9, succinyl-CoA ligase; E10, malate dehydrogenase; E11, ribulose bisphosphate carboxylase; E12, transketolase; E13, ribulose-phosphate 3-epimerase; E14, phosphoribulokinase; E15, beta-phosphoglucomutase, 1,4-alpha-glucan branching enzyme; E16, sucrose phosphate synthase; E17, sucrose synthase. Proteins and enzymes in the light reaction complex are plastocyanin, ferredoxin [2Fe-2S], chlorophyll A-B binding protein, photosystem II protein PsbX, photosystem II protein PsbW, photosystem II protein PsbY, photosystem II oxygen evolving complex protein PsbP, photosystem II protein PsbR, photosystem II manganese-stabilizing protein PsbO, photosystem II oxygen evolving complex protein PsbQ, photosystem I reaction centre (subunit XI PsaL), photosystem I psaG/psaK protein, photosystem I reaction centre subunit N, photosystem I reaction center protein PsaF (subunit III), NADH:flavin oxidoreductase/NADH oxidase, and cytochrome b ubiquinol oxidase. The ratios of up- (+) or down (-) -regulated tags are indicated. Detailed information for light reaction complexes is listed in Additional file . Note that the key enzymes are either up- or down-regulated in three tissues; this behavior suggests active yet unique regulations in the hybrid

Differential gene expression in an elite hybrid rice cultivar () and its parental lines based on SAGE data-0

<p><b>Copyright information:</b></p><p>Taken from "Differential gene expression in an elite hybrid rice cultivar () and its parental lines based on SAGE data"</p><p>http://www.biomedcentral.com/1471-2229/7/49</p><p>BMC Plant Biology 2007;7():49-49.</p><p>Published online 19 Sep 2007</p><p>PMCID:PMC2077334.</p><p></p>A, UniGene, and ST; see Materials and Methods) were used for the construction of virtual transcripts. When the transcript sequences extend beyond the predicated coding sequence were available, the UTR sequences were aligned and determined (A). When the information was not available, the theoretical 3' UTR sequences were determined based on a stepwise (100-, 200-, 300-, 400-, and 500 bp) assessment of the genome sequences and added after the stop codons (B). Nearly 58.7% of the assigned tags have a 3'-UTR length of 300 bp