A field and video-annotation guide for baited remote underwater stereo-video surveys of demersal fish assemblages

Researchers TL, BG, JW, NB and JM were supported by the Marine Biodiversity Hub through funding from the Australian Government's National Environmental Science Program. Data validation scripts and GlobalArchive.org were supported by the Australian Research Data Commons, the Gorgon-Barrow Island Gorgon Barrow Island Net Conservation Benefits Fund, administered by the Government of Western Australia and the BHP/UWA Biodiversity and Societal Benefits of Restricted Access Areas collaboration.1. Baited remote underwater stereo-video systems (stereo-BRUVs) are a popular tool to sample demersal fish assemblages and gather data on their relative abundance and body-size structure in a robust, cost-effective, and non-invasive manner. Given the rapid uptake of the method, subtle differences have emerged in the way stereo-BRUVs are deployed and how the resulting imagery are annotated. These disparities limit the interoperability of datasets obtained across studies, preventing broad-scale insights into the dynamics of ecological systems. 2. We provide the first globally accepted guide for using stereo-BRUVs to survey demersal fish assemblages and associated benthic habitats. 3. Information on stereo-BRUV design, camera settings, field operations, and image annotation are outlined. Additionally, we provide links to protocols for data validation, archiving, and sharing. 4. Globally, the use of stereo-BRUVs is spreading rapidly. We provide a standardised protocol that will reduce methodological variation among researchers and encourage the use of Findable, Accessible, Interoperable, and Reproducible (FAIR) workflows to increase the ability to synthesise global datasets and answer a broad suite of ecological questions.Publisher PDFPeer reviewe

Depth and habitat determine assemblage structure of South Africa’s warm-temperate reef fish

Depth and habitat are important predictors of fish assemblage structure, yet current no-take marine protected area (MPA) networks are generally limited to providing refuge for fish species that inhabit shallow waters and may exclude deep habitats essential to exploited populations. To ensure MPA efficacy at the design, uptake and management levels, baseline data on fish populations associated with deep nearshore reefs are needed. This study employed baited remote underwater stereo-video systems to investigate fish habitat associations at shallow (11–25 m) and deep (45–75 m) reef sites in the Tsitsikamma National Park MPA, South Africa. The compositions of fish assemblages at shallow and deep reef sites were significantly different. Specifically, rare species, juveniles and low trophic level species dominated the shallow reef, while deep reef assemblages were characterised by large, sexually mature and predatory fish. The body size of abundant species was also correlated with depth, with larger individuals being more abundant on deeper reefs. Habitat types were identified according to a habitat classification system established in a previous study, which resulted in four broad depth separated habitat types (defined by macrobenthos and environmental variables). Canonical analysis of principle coordinates (CAP) indicated that habitat type was a good categorical predictor of the observed fish assemblages. The CAP analysis determined that 86 % of the samples were correctly assigned to the habitat type from which they were collected, indicating that specific fish assemblages were associated with distinct habitat types. This study highlights the importance of protecting both shallow and deep reefs, not only to ensure the conservation of particular fish assemblages, but also to provide protection for all stages of the life cycle of fish species