BridgeDb Webservice

Major release tweaking the JSON output, fixes the returning of identifiers in the/xrefBatch/$DataSource call, fixes a few error messages for bad input, and includes many more tests and some further code clean up. Everyone is encouraged to upgrade to this version. Full Changelog: https://github.com/bridgedb/BridgeDbWebservice/compare/2.1.2...2.1.3</p

BridgeDb

Minor release that a few NullPointerExceptions in the QC tool, migrated the VoID tool into a separate org.bridgedb.tools.voidtool module, add Prymnesium parvum and Skeletonema marinoi as new species, and removes to plugin for the discontinued Taverna. The below examples assume you need just org.bridgedb.bio, and you can use it as template and modify to add other modules. For Maven: &lt;dependencies&gt; &lt;dependency&gt; &lt;groupId&gt;org.bridgedb&lt;/groupId&gt; &lt;artifactId&gt;org.bridgedb.bio&lt;/artifactId&gt; &lt;version&gt;3.0.21&lt;/version&gt; &lt;/dependency&gt; &lt;/dependencies&gt; For Gradle: compile group: 'org.bridgedb', name: 'org.bridgedb.bio', version: '3.0.21' For Ivy: &lt;dependency org="org.bridgedb" name="org.bridgedb.bio" rev="3.0.21"/&gt; For Buildr: 'org.bridgedb:org.bridgedb.bio:jar:3.0.21' Full Changelog: https://github.com/bridgedb/BridgeDb/compare/release_3.0.20...release_3.0.21</p

BridgeDb

&lt;p&gt;Minor release that updates the hardcoded links to the BridgeDb Webservice to use HTTPS. It also fixes a compile issue on some platforms and updated the Maven WAR plugin.&lt;/p&gt; &lt;p&gt;The below examples assume you need just &lt;code&gt;org.bridgedb.bio&lt;/code&gt;, and you can use it as template and modify to add other modules.&lt;/p&gt; &lt;p&gt;For &lt;a href="https://maven.apache.org/"&gt;Maven&lt;/a&gt;:&lt;/p&gt; &lt;pre&gt;&lt;code class="language-xml"&gt;&lt;dependencies&gt; &lt;dependency&gt; &lt;groupId&gt;org.bridgedb&lt;/groupId&gt; &lt;artifactId&gt;org.bridgedb.bio&lt;/artifactId&gt; &lt;version&gt;3.0.24&lt;/version&gt; &lt;/dependency&gt; &lt;/dependencies&gt; &lt;/code&gt;&lt;/pre&gt; &lt;p&gt;For &lt;a href="https://gradle.org/"&gt;Gradle&lt;/a&gt;:&lt;/p&gt; &lt;pre&gt;&lt;code class="language-gradle"&gt;compile group: 'org.bridgedb', name: 'org.bridgedb.bio', version: '3.0.24' &lt;/code&gt;&lt;/pre&gt; &lt;p&gt;For &lt;a href="http://ant.apache.org/ivy/"&gt;Ivy&lt;/a&gt;:&lt;/p&gt; &lt;pre&gt;&lt;code class="language-xml"&gt;&lt;dependency org=&quot;org.bridgedb&quot; name=&quot;org.bridgedb.bio&quot; rev=&quot;3.0.24&quot;/&gt; &lt;/code&gt;&lt;/pre&gt; &lt;p&gt;For &lt;a href="https://buildr.apache.org/"&gt;Buildr&lt;/a&gt;:&lt;/p&gt; &lt;pre&gt;&lt;code class="language-buildr"&gt;'org.bridgedb:org.bridgedb.bio:jar:3.0.24' &lt;/code&gt;&lt;/pre&gt; &lt;p&gt;&lt;strong&gt;Full Changelog&lt;/strong&gt;: https://github.com/bridgedb/BridgeDb/compare/release_3.0.23...release_3.0.24&lt;/p&gt;If you use this software, please cite it as below

BridgeDb

&lt;p&gt;Minor change, big impact: this is the &lt;code&gt;UniProtKB&lt;/code&gt; release, where the full name of the &lt;code&gt;S&lt;/code&gt; data sources is changed. Any downstream use that depends on the full name to find the UniProt datasource may be affected. We introduced some backwards compatibility, but be aware of unexpected behavior.&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Full Changelog&lt;/strong&gt;: https://github.com/bridgedb/BridgeDb/compare/release_3.0.23...release_3.1.0&lt;/p&gt;If you use this software, please cite it as below