Domain Adaptive Transfer Attack (DATA)-based Segmentation Networks for Building Extraction from Aerial Images

Semantic segmentation models based on convolutional neural networks (CNNs) have gained much attention in relation to remote sensing and have achieved remarkable performance for the extraction of buildings from high-resolution aerial images. However, the issue of limited generalization for unseen images remains. When there is a domain gap between the training and test datasets, CNN-based segmentation models trained by a training dataset fail to segment buildings for the test dataset. In this paper, we propose segmentation networks based on a domain adaptive transfer attack (DATA) scheme for building extraction from aerial images. The proposed system combines the domain transfer and adversarial attack concepts. Based on the DATA scheme, the distribution of the input images can be shifted to that of the target images while turning images into adversarial examples against a target network. Defending adversarial examples adapted to the target domain can overcome the performance degradation due to the domain gap and increase the robustness of the segmentation model. Cross-dataset experiments and the ablation study are conducted for the three different datasets: the Inria aerial image labeling dataset, the Massachusetts building dataset, and the WHU East Asia dataset. Compared to the performance of the segmentation network without the DATA scheme, the proposed method shows improvements in the overall IoU. Moreover, it is verified that the proposed method outperforms even when compared to feature adaptation (FA) and output space adaptation (OSA).Comment: 11pages, 12 figure

SOLiDzipper: A High Speed Encoding Method for the Next-Generation Sequencing Data

Background Next-generation sequencing (NGS) methods pose computational challenges of handling large volumes of data. Although cloud computing offers a potential solution to these challenges, transferring a large data set across the internet is the biggest obstacle, which may be overcome by efficient encoding methods. When encoding is used to facilitate data transfer to the cloud, the time factor is equally as important as the encoding efficiency. Moreover, to take advantage of parallel processing in cloud computing, a parallel technique to decode and split compressed data in the cloud is essential. Hence in this review, we present SOLiDzipper, a new encoding method for NGS data. Methods The basic strategy of SOLiDzipper is to divide and encode. NGS data files contain both the sequence and non-sequence information whose encoding efficiencies are different. In SOLiDzipper, encoded data are stored in binary data block that does not contain the characteristic information of a specific sequence platform, which means that data can be decoded according to a desired platform even in cases of Illumina, Solexa or Roche 454 data. Results The main calculation time using Crossbow was 173 minutes when 40 EC2 nodes were involved. In that case, an analysis preparation time of 464 minutes is required to encode data in the latest DNA compression method like G-SQZ and transmit it on a 183 Mbit/s bandwidth. However, it takes 194 minutes to encode and transmit data with SOLiDzipper under the same bandwidth conditions. These results indicate that the entire processing time can be reduced according to the encoding methods used, under the same network bandwidth conditions. Considering the limited network bandwidth, high-speed, high-efficiency encoding methods such as SOLiDzipper can make a significant contribution to higher productivity in labs seeking to take advantage of the cloud as an alternative to local computing. Availability http://szipper.dinfree.com . Academic/non-profit: Binary available for direct download at no cost. For-profit: Submit request for for-profit license from the web-site

Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance

BACKGROUND:The impact of human activities on the environmental resistome has been documented in many studies, but there remains the controversial question of whether the increased antibiotic resistance observed in anthropogenically impacted environments is just a result of contamination by resistant fecal microbes or is mediated by indigenous environmental organisms. Here, to determine exactly how anthropogenic influences shape the environmental resistome, we resolved the microbiome, resistome, and mobilome of the planktonic microbial communities along a single river, the Han, which spans a gradient of human activities. RESULTS:The bloom of antibiotic resistance genes (ARGs) was evident in the downstream regions and distinct successional dynamics of the river resistome occurred across the spatial continuum. We identified a number of widespread ARG sequences shared between the river, human gut, and pathogenic bacteria. These human-related ARGs were largely associated with mobile genetic elements rather than particular gut taxa and mainly responsible for anthropogenically driven bloom of the downstream river resistome. Furthermore, both sequence- and phenotype-based analyses revealed environmental relatives of clinically important proteobacteria as major carriers of these ARGs. CONCLUSIONS:Our results demonstrate a more nuanced view of the impact of anthropogenic activities on the river resistome: fecal contamination is present and allows the transmission of ARGs to the environmental resistome, but these mobile genes rather than resistant fecal bacteria proliferate in environmental relatives of their original hosts. Video abstract

Differences in the Fatty Acid Profile, Morphology, and Tetraacetylphytosphingosine-Forming Capability Between Wild-Type and Mutant Wickerhamomyces ciferrii

One tetraacetylphytosphingosine (TAPS)-producing Wickerhamomyces ciferrii mutant was obtained by exposing wild-type W. ciferrii to γ-ray irradiation. The mutant named 736 produced up to 9.1 g/L of TAPS (218.7 mg-TAPS/g-DCW) during batch fermentation in comparison with 1.7 g/L of TAPS (52.2 mg-TAPS/g-DCW) for the wild type. The highest production, 17.7 g/L of TAPS (259.6 mg-TAPS/g-DCW), was obtained during fed-batch fermentation by mutant 736. Fatty acid (FA) analysis revealed an altered cellular FA profile of mutant 736: decrease in C16:0 and C16:1 FA levels, and increase in C18:1 and C18:2 FA levels. Although a significant change in the cellular FA profile was observed, scanning electron micrographs showed that morphology of wild-type and mutant 736 cells was similar. Genetic alteration analysis of eight TAPS biosynthesis-related genes revealed that there are no mutations in these genes in mutant 736; however, mRNA expression analysis indicated 30% higher mRNA expression of TCS10 among the eight genes in mutant 736 than that in the wild-type. Collectively, these results imply that the enhancement of TAPS biosynthesis in mutant 736 may be a consequence of system-level genetic and physiological alterations of a complicated metabolic network. Reverse metabolic engineering based on system-level omics analysis of mutant 736 can make the mutant more suitable for commercial production of TAPS

Effects of Chung-Pae Inhalation Therapy on a Mouse Model of Chronic Obstructive Pulmonary Disease

Chung-pae (CP) inhalation therapy is a method frequently used in Korea to treat lung disease, especially chronic obstructive pulmonary disease (COPD). This study investigated the effects of CP inhalation on a COPD animal model. C57BL/6 mice received porcine pancreatic elastase (PPE) and lipopolysaccharide (LPS) alternately three times for 3 weeks to induce COPD. Then, CP (5 or 20 mg/kg) was administered every 2 h after the final LPS administration. The effect of CP was evaluated by bronchoalveolar lavage (BAL) fluid analysis, histological analysis of lung tissue, and reverse transcription polymerase chain reaction analysis of mRNA of interleukin- (IL-) 1β, tumor necrosis factor- (TNF-) α, IL-6, and tumor growth factor- (TGF-) β. Intratracheal CP administration reduced the number of leukocytes and neutrophils in BAL fluid, inhibited the histological appearance of lung damage, and decreased the mRNA levels of the proinflammatory cytokines IL-1β, TNF-α, IL-6, and TGF-β. Intratracheal CP administration effectively decreased the chronic inflammation and pathological changes in a PPE- and LPS-induced COPD mouse model. Therefore, we suggest that CP is a promising strategy for COPD

Continuous process of carbon nanotubes synthesis by decomposition of methane using an arc-jet plasma

Author's version; The Joint Meeting of 7th APCPST (Asia Pacific Conference on Plasma Science and Technology) and 17th SPSM (Symposium on Plasma Science for Materials) - 7th APCPST/17th SPSMWe present a method of producing carbon nanotubes by means of the thermal plasma decomposition of methane in an arc-jet plasma of high temperature (5000–20,000 K). Carbon nanotubes are produced under a floating condition by introducing methane and a mixture of Ni–Y powders into the arc-jet plasma flame generated by a non-transferred plasma torch. Material evaluations of the synthesized product by transmission electron microscopy (TEM) and scanning electron microscopy (SEM) reveal that the growth rate of carbon nanotubes is very high, and that the multi-walled carbon nanotubes of high purity are mainly produced. Since this process is continuously operable and easily scalable, it is expected to be a promising technique for large-scale commercial production of carbon nanotubes.Korea Institute of Science and Technology Evaluation and Planning (KISTEP

Effects of Anode Nozzle Geometry on Ambient Air Entrainment into Thermal Plasma Jets Generated by Non-Transferred Plasma Torch

The geometrical effects of anode nozzle in a non-transferred plasma torch on air entrainment are examined by measurements of plasma composition using a quadruple mass spectrometry. In addition, the radial and axial distributions of plasma enthalpy, temperature and velocity are measured by using an enthalpy probe method. Two types of anode nozzle geometry, i.e., cylindrical and stepped nozzles, are employed for the torch in this experiment. As a result of gas composition measurements, the new stepped nozzle turns out to produce a thermal plasma jet having lower air contents in it compared with the conventional cylindrical nozzle. The plasma jet produced by the stepped nozzle exhibits higher enthalpy and temperature, especially around the core of the plasma flame due to less intrusion of ambient air. Furthermore, the axial velocity distribution with a slowly changing variation is observed in the stepped nozzle case because of the plasma flow less disturbed by air entrainment. From these experimental results of thermal plasma characteristics and nozzle geometry effects on air entrainment, high quality of coating products are expected in plasma spraying by using the stepped nozzle due to higher plasma enthalpy and temperature, and lower velocity drop along the plasma jet