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    The Golden Years

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    SARS-CoV-2 variant biology immune escape, transmission and fitness

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    Threshold Crack Speed Controls Dynamical Fracture of Silicon Single Crystals

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    Fracture experiments of single silicon crystals reveal that after the critical fracture load is reached, the crack speed jumps from zero to [approximate]2 km/sec, indicating that crack motion at lower speeds is forbidden. This contradicts classical continuum fracture theories predicting a continuously increasing crack speed with increasing load. Here we show that this threshold crack speed may be due to a localized phase transformation of the silicon lattice from 6-membered rings to a 5–7 double ring at the crack tip

    The effects of simulated head rotation on the apparant frontal plane

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    This experiment attempted to see whether prolonged exposure to an optical correlate of a rotated head position could produce stereoscopic after-effects similar to those which follow genuine head rotation. To do this a wedge prism was used to simulate head rotation, with head and body posture confined to the median plane. The results show an overall significant difference under simulated head rotation condition, but no differences as a function of eye dominance or direction of simulated head turn

    Vlasov simulation in multiple spatial dimensions

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    A long-standing challenge encountered in modeling plasma dynamics is achieving practical Vlasov equation simulation in multiple spatial dimensions over large length and time scales. While direct multi-dimension Vlasov simulation methods using adaptive mesh methods [J. W. Banks et al., Physics of Plasmas 18, no. 5 (2011): 052102; B. I. Cohen et al., November 10, 2010, http://meetings.aps.org/link/BAPS.2010.DPP.NP9.142] have recently shown promising results, in this paper we present an alternative, the Vlasov Multi Dimensional (VMD) model, that is specifically designed to take advantage of solution properties in regimes when plasma waves are confined to a narrow cone, as may be the case for stimulated Raman scatter in large optic f# laser beams. Perpendicular grid spacing large compared to a Debye length is then possible without instability, enabling an order 10 decrease in required computational resources compared to standard particle in cell (PIC) methods in 2D, with another reduction of that order in 3D. Further advantage compared to PIC methods accrues in regimes where particle noise is an issue. VMD and PIC results in a 2D model of localized Langmuir waves are in qualitative agreement

    Precision metering of microliter volumes of biological fluids in micro-gravity

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    Concepts were demonstrated and investigated for transferring accurately known and reproducible microliter volumes of biological fluids from sample container onto dry chemistry slides in microgravity environment. Specific liquid transfer tip designs were compared. Information was obtained for design of a liquid sample handling system to enable clinical chemical analysis in microgravity. Disposable pipet tips and pipet devices that were designed to transfer microliter volumes of biological fluid from a (test tube) sample container in 1-G environment were used during microgravity periods of parabolic trajectories of the KC-135 aircraft. The transfer process was recorded using charge coupled device camera and video cassette equipment. Metering behavior of water, a synthetic aqueous protein solution, and anticoagulated human blood was compared. Transfer of these liquids to 2 substrate materials representative of rapidly wettable and slowly wettable dry chemistry slide surface was compared

    Improving the identification of antigenic sites in the H1N1 Influenza virus through accounting for the experimental structure in a sparse hierarchical Bayesian model

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    Understanding how genetic changes allow emerging virus strains to escape the protection afforded by vaccination is vital for the maintenance of effective vaccines. We use structural and phylogenetic differences between pairs of virus strains to identify important antigenic sites on the surface of the influenza A(H1N1) virus through the prediction of haemagglutination inhibition (HI) titre: pairwise measures of the antigenic similarity of virus strains. We propose a sparse hierarchical Bayesian model that can deal with the pairwise structure and inherent experimental variability in the H1N1 data through the introduction of latent variables. The latent variables represent the underlying HI titre measurement of any given pair of virus strains and help to account for the fact that, for any HI titre measurement between the same pair of virus strains, the difference in the viral sequence remains the same. Through accurately representing the structure of the H1N1 data, the model can select virus sites which are antigenic, while its latent structure achieves the computational efficiency that is required to deal with large virus sequence data, as typically available for the influenza virus. In addition to the latent variable model, we also propose a new method, the block‐integrated widely applicable information criterion biWAIC, for selecting between competing models. We show how this enables us to select the random effects effectively when used with the model proposed and we apply both methods to an A(H1N1) data set
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