N-terminal modification of VEGF-A C terminus-derived peptides delineates structural features involved in neuropilin-1 binding and functional activity

The interaction between VEGF-A and its neuropilin (NRP) receptors mediates a number of important biological effects. NRP1 and the related molecule NRP2 are widely expressed on multiple tumour types and throughout the tumour vasculature, and are emerging as critical molecules required for the progression of angiogenic diseases. Given the increasing evidence supporting a role for NRP1 in tumour development, there is growing interest in developing inhibitors of NRP1 interactions with VEGF and its other ligands. In order to probe the interaction we synthesised a number of exon 7- and 8-derived bicyclic peptides with N-terminal lipophilic groups and found a simple N-octanoyl derivative (EG00086) to be the most potent and functionally active. Detailed modelling studies indicated that new intramolecular hydrogen bonds were formed, stabilising the structure and possibly contributing to the potency. Removal of a salt bridge between D142 and R164 implicated in VEGF-A binding to neuropilin-1 had a minor effect on potency. Isothermal calorimetry was used to assess binding of EG00086 to NRP1 and NRP2, and the stability of the peptide in serum and in vivo was investigated. EG00086 is a potent blocker of VEGF-promoted cellular adhesion to extracellular matrices, and phosphorylation of p130Cas contributes to this effect

Copper (II) mediated arylation with aryl boronic acids for the N-derivatization of pyrazole libraries

Original article can be found at: http://pubs.acs.org/journal/jcchff Copyright American Chemical Society DOI: 10.1021/cc034065k [Full text of this article is not available in the UHRA]A N-derivatized 3-dimethylaminopropyloxypyrazole library was prepared using solution-phase parallel synthesis. The library was designed using physicochemical constraints designed to remove non-membrane-permeable molecules. Cupric acetate-mediated N-arylation with aryl boronic acids proceeded regioselectively to form the N-2-substituted derivatives. The presence of the 3-dimethylaminopropyloxy group was found to completely control the regioselectivity of the arylation. Presence of a dimethylaminoethyloxy or dimethylaminobutyloxy group gave a lesser degree of regioselectivity. The scope of the method as applied to library synthesis is discussed.Peer reviewe

Structure and Function of Enzymes Involved in the Biosynthesis of Tropane Alkaloids

Tropane alkaloids are found in a scattered distribution among the angiosperm families including members within the Solanaceae, Erythroxylaceae, Convolvulaceae, and Brassicaceae. Recent studies regarding the origins of tropane production provide strong evidence for a polyphyletic origin, suggesting that novel enzymes from different gene families have been recruited during the course of flowering plant evolution. Tropane alkaloid biosynthesis is best documented on the molecular genetic and biochemical level from solanaceous species. Regardless of the system chosen, there are currently gaps in the knowledge of enzyme structure-function relationships and how they influence tropane alkaloid biosynthesis. Obtaining insights on structure-function relationships of tropane biosynthetic enzymes is critical to understanding regulation, turnover, and flux of metabolites through the pathway. In this review, we discuss the current state of knowledge regarding structure-function relationships of the known steps involved in tropane biosynthesis.This is a post-peer-review, pre-copyedit version of a chapter published as Kim, Neill, Benjamin Chavez, Charles Stewart, and John C. D’Auria. "Structure and Function of Enzymes Involved in the Biosynthesis of Tropane Alkaloids." In Tropane Alkaloids (Srivastava V., Mehrotra S., Mishra S., eds.) 2021: 21-50. The final authenticated version is available online at DOI: 10.1007/978-981-33-4535-5_2. Posted with permission.</p