Systematic image-driven analysis of the spatial Drosophila embryonic expression landscape

We created innovative virtual representation for our large scale Drosophila insitu expression dataset. We aligned an elliptically shaped mesh comprised of small triangular regions to the outline of each embryo. Each triangle defines a unique location in the embryo and comparing corresponding triangles allows easy identification of similar expression patterns.The virtual representation was used to organize the expression landscape at stage 4-6. We identified regions with similar expression in the embryo and clustered genes with similar expression patterns.We created algorithms to mine the dataset for adjacent non-overlapping patterns and anti-correlated patterns. We were able to mine the dataset to identify co-expressed and putative interacting genes.Using co-expression we were able to assign putative functions to unknown genes

Technical description of candidate fluorescence compounds and radioisotopes for a nuclear smuggling deterrence tag (IL500E)

This report summarizes the efforts completed in identifying candidate fluorescence compounds and radioisotopes for a developing tagging system. The tagging system is being developed as a deterrent to nuclear smuggling, by providing a means of: (1) tracing materials and pilferers to the facility of origin for any recovered special nuclear materials; (2) inventory control of long-term stored items containing special nuclear materials; and (3) tracking materials transferred between facilities. The tagging system uses four types of tagging materials to cover a range of applications intended to prevent the pilfering of special nuclear materials. One material, fluorescent compounds which are invisible without ultraviolet or near-infrared detection systems, is marked on controlled items with a tracking pattern that corresponds to a specified item in a specified location in the data control system. The tagging system uses an invisible, fluorescent dusting powder to mark equipment and personnel who inappropriately handle the tagged material. The tagging system also uses unique combinations of radionuclides to identify the facility of origin for any special nuclear material. Currently, 18 long-lived radioisotopes, 38 short-live radioisotopes and 10 fluorescent compounds have been selected as candidate materials for the tagging system

As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets

Motivation: Tiled serial section Transmission Electron Microscopy (ssTEM) is increasingly used to describe high-resolution anatomy of large biological specimens. In particular in neurobiology, TEM is indispensable for analysis of synaptic connectivity in the brain. Registration of ssTEM image mosaics has to recover the 3D continuity and geometrical properties of the specimen in presence of various distortions that are applied to the tissue during sectioning, staining and imaging. These include staining artifacts, mechanical deformation, missing sections and the fact that structures may appear dissimilar in consecutive sections

As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets

Motivation: Tiled serial section Transmission Electron Microscopy (ssTEM) is increasingly used to describe high-resolution anatomy of large biological specimens. In particular in neurobiology, TEM is indispensable for analysis of synaptic connectivity in the brain. Registration of ssTEM image mosaics has to recover the 3D continuity and geometrical properties of the specimen in presence of various distortions that are applied to the tissue during sectioning, staining and imaging. These include staining artifacts, mechanical deformation, missing sections and the fact that structures may appear dissimilar in consecutive sections

Cyber-physical systems design for runtime trustworthiness maintenance supported by tools

The trustworthiness of cyber-physical systems is a critical factor for establishing wide-spread adoption of these systems. Hence, especially the behavior of safety-critical software components needs to be monitored and managed during system operation. Runtime trustworthiness maintenance should be planned and prepared in early requirements and design phases. This involves the identification of threats that may occur and affect user’s trust at runtime, as well as related controls that can be executed to mitigate the threats. Furthermore, observable and measureable system quality properties have to be identified as indicators of threats, and interfaces for reporting these properties as well as for executing controls have to be designed and implemented. This paper presents a process model for preparing and designing systems for runtime trustworthiness maintenance, which is supported by several tools that facilitate the tasks to be performed by requirements engineers and system designer

MuPix7 - A fast monolithic HV-CMOS pixel chip for Mu3e

The MuPix7 chip is a monolithic HV-CMOS pixel chip, thinned down to 50 \mu m. It provides continuous self-triggered, non-shuttered readout at rates up to 30 Mhits/chip of 3x3 mm^2 active area and a pixel size of 103x80 \mu m^2. The hit efficiency depends on the chosen working point. Settings with a power consumption of 300 mW/cm^2 allow for a hit efficiency >99.5%. A time resolution of 14.2 ns (Gaussian sigma) is achieved. Latest results from 2016 test beam campaigns are shown.Comment: Proceedingsfor the PIXEL2016 conference, submitted to JINST A dangling reference has been removed from this version, no other change

Demonstration of a VOC in-situ fiber optic sensor for use with a penetrometer analysis system

Researchers at the Idaho National Engineering Laboratory with their industrial CRADA partner GEOCENTERS demonstrated a fiber optic based VOC sensor at the Army Environmental Center (AEC) technology demonstration at Dover Air Force Base. The sensor used during the demonstration was a single fiber optic cable coupled to an in situ sensor element contained in a cone penetrometer tip. The sensor`s fluorescence response was measured at the surface using an optical breadboard-based instrument. Results from this demonstration showed that the sensor provided semi-quantitative results for total VOCs comparable to the historical values of VOCs. In addition, the demonstration identified several technical challenges for improvement of the sensor. This paper describes the analytical properties of the reversible sensing materials, construction of an improved sensor system, and the planned demonstration of the modified in-situ VOC sensor system. This sensor system is tentatively scheduled for demonstration at the Army Environmental Center`s Aberdeen Proving Ground Test site. Improvements to the VOC sensor system include an optical configuration that will correct for soil matrix interferences and multiple sensing substrates to learn whether VOC selectivity can be achieved