Breakup of elongated droplets in microfluidic T-junctions

We show experimentally, and explain theoretically, what velocity is needed to break an elongated droplet entering a microfluidic T-junction. Our experiments on short droplets confirm previous experimental and theoretical work that shows that the critical velocity for breakup scales with the inverse of the length of the droplet raised to the fifth power. For long elongated droplets that have a length about thrice the channel width, we reveal a drastically different scaling Taking into account that a long droplet remains squeezed between the channel walls when it enters a T-j unction, such that the gutters in the corners of the channel are the main route for the continuous phase to flow around the droplet, we developed a model that explains that the critical velocity for breakup is inversely proportional to the droplet length. This model for the transition between breaking and nonbreaking droplets is in excellent agreement with our experiments.FWN – Publicaties zonder aanstelling Universiteit Leide

An analysis of organism lifelines in an industrial bioreactor using Lattice-Boltzmann CFD

Euler-Lagrange CFD simulations, where the biotic phase is represented by computational particles (parcels), provide information on environmental gradients inside bioreactors from the microbial perspective. Such information is highly relevant for reactor scale-down and process optimization. One of the major challenges is the computational intensity of CFD simulations, especially when resolution of dynamics in the flowfield is required. Lattice-Boltzmann large-eddy simulations (LB-LES) form a very promising approach for simulating accurate, dynamic flowfields in stirred reactors, at strongly reduced computation times compared to finite volume approaches. In this work, the performance of LB-LES in resolving substrate gradients in large-scale bioreactors is explored, combined with the inclusion of a Lagrangian biotic phase to provide the microbial perspective. In addition, the hydrodynamic performance of the simulations is confirmed by verification of hydrodynamic characteristics (radial velocity, turbulent kinetic energy, energy dissipation) in the impeller discharge stream of a 29 cm diameter stirred tank. The results are compared with prior finite volume simulation results, both in terms of hydrodynamic and biokinetic observations, and time requirements.BT/Bioprocess Engineerin

Through the Organism’s eyes: The interaction between hydrodynamics and metabolic dynamics in industrial-scale fermentation processes

The broth in industrial scale fermentors may contain significant gradients in, for example, substrate concentration, dissolved oxygen and shear rates. From the perspective of microbes in this fermentor, these gradients translate to temporal variations in their environment that may affect their metabolic response. As a result, there may be differences in process yield between laboratory scale fermentations and their industrial counterpart. Rather than scaling-up bioprocesses based on equivalence, it is recommended to scale-down: mimic the large-scale environment in lab scale setups, to account for hydrodynamic-metabolic interaction from the start. In this thesis, the use of Euler-Lagrange computational fluid dynamics to capture the large-scale fermentation environment is explored. Lagrangian simulations offer to study processes from the microbial perspective (so-called “lifelines”), and enable coupling of metabolic models describing the response to external variations. With this, it is possible to take the history of the trajectory of the microbe into account, as organisms may not adapt to their surroundings instantaneously. Guidelines for the setup of fermentor simulations are presented, and several means for processing the lifelines are discussed. The obtained information is used to design lab-scale fermentations that mimic large-scale conditions. It is furthermore shown how coupled hydrodynamic-metabolic simulations can be used to predict yield-loss, assess process improvements, and study the onset of population heterogeneity in large-scale fermentors. Additionally, a more fundamental towards the role of the turbulent Schmidt number in multi-impeller mixing is included.ChemE/Transport Phenomen

Inter-compartment interaction in multi-impeller mixing: Part I. Experiments and multiple reference frame CFD

CFD simulations of mixing in single-phase multi-Rushton stirred tanks based on the RANS methodology frequently show an over-prediction of the mixing time. This hints at an under-prediction of the mass exchange between the compartments formed around the individual impellers. Some studies recommend tuning the turbulent Schmidt number to address this issue, but this appears to be an ad-hoc correction rather than physical adjustment, thereby compromising the predictive value of the method. In this work, we study the flow profile in between two Rushton impellers in stirred tank. The data hints at the presence of macro-instabilities, and a peak in turbulent kinetic energy in the region of convergent flow, which both may promote inter-compartment mass exchange. CFD studies using the steady-state multiple reference frame model (unsteady simulations are treated in part II) inherently fail to include the macro-instability, and underestimate the turbulent kinetic energy, thereby strongly over-estimating mixing time. Furthermore, the results are highly mesh-sensitive, with increasing mesh density leading to a poorer prediction of the mixing time. Despite proper results for 1-impeller studies, we do not deem MRF-RANS models suitable for mixing studies in multi-impeller geometries.</p

Inter-compartment interaction in multi-impeller mixing: Part II. Experiments, sliding mesh and large Eddy simulations

Steady state multiple reference frame-RANS (MRF-RANS) simulations frequently show strong over-predictions of the mixing time in single-phase, multi-impeller mixing tanks, which is sometimes patched by ad hoc tuning of the turbulent Schmidt-number. In Part I of this work, we experimentally revealed the presence of macro-instabilities in the region between the impellers, as well as a peak in the turbulent kinetic energy in the region where the flow from the individual impellers converges. The MRF-RANS method was found unable to capture both. In this second paper, we show that the sliding-mesh RANS (SM-RANS) approach does capture the effect of macro-instabilities, while still underestimating the turbulent kinetic energy. Consequently, the SM-RANS method mildly over-estimates the mixing time, while being less sensitive to the exact mesh geometry. Large eddy simulations with the dynamic Smagorinsky model reasonably capture the kinetic energy contained in macro-instabilities, and properly assess the turbulent kinetic energy in the region between the impellers, even for crude meshes. Consequently, the mixing time is reasonably assessed, and even under-predicted at the crudest meshes. However, the turbulent kinetic energy and energy dissipation in the impeller discharge stream are poorly assessed by the dynamic Smagorinsky model.</p

Microbial lifelines in bioprocesses: From concept to application

Bioprocesses are scaled up for the production of large product quantities. With larger fermenter volumes, mixing becomes increasingly inefficient and environmental gradients get more prominent than in smaller scales. Environmental gradients have an impact on the microorganism's metabolism, which makes the prediction of large-scale performance difficult and can lead to scale-up failure. A promising approach for improved understanding and estimation of dynamics of microbial populations in large-scale bioprocesses is the analysis of microbial lifelines. The lifeline of a microbe in a bioprocess is the experience of environmental gradients from a cell's perspective, which can be described as a time series of position, environment and intracellular condition. Currently, lifelines are predominantly determined using models with computational fluid dynamics, but new technical developments in flow-following sensor particles and microfluidic single-cell cultivation open the door to a more interdisciplinary concept. We critically review the current concepts and challenges in lifeline determination and application of lifeline analysis, as well as strategies for the integration of these techniques into bioprocess development. Lifelines can contribute to a successful scale-up by guiding scale-down experiments and identifying strain engineering targets or bioreactor optimisations.Green Open Access added to TU Delft Institutional Repository ‘You share, we take care!’ – Taverne project https://www.openaccess.nl/en/you-share-we-take-care Otherwise as indicated in the copyright section: the publisher is the copyright holder of this work and the author uses the Dutch legislation to make this work public.BT/Bioprocess Engineerin

Metabolic-fluid dynamics model construction and scale-down design for an industrial penicillin chrysogenum fermentation with combined dissolved oxygen and glucose concentration dynamics

This study focuses on the metabolic impacts of simultaneous glucose and oxygen concentration gradients on penicillin production in an industrial-scale fermentor, using the computational fluid dynamics-cellular reaction dynamics approach. Inclusion of oxygen-coupling considerably impacts the glucose uptake and resulting penicillin productivity. This is characterised by six metabolic regimes; lifeline data reconstructed from experimental results, recorded from the cellular perspective, indicates rapid dynamics in glucose and dissolved oxygen uptake by the microorganisms. The results are highly sensitive to variations in the oxygen-related model parameters, requiring accurate insight into the multiphase hydrodynamics and metabolic processes. Hypothetical scenarios with stronger glucose-oxygen limitations than tested experimentally were further explored. A precision scale-down (SD) simulator was designed based on the lifeline data, requiring considerable operational dynamics, with increasing system complexity and implementation difficulty. These insights may inspire further research into alternative SD configurations better suited to mimic the rapid dynamics of large-scale fermentation processes.</p

From industrial fermentor to CFD-guided downscaling: what have we learned?

Euler–Lagrange computational fluid dynamics simulations offer great potential for the integration of transport dynamics and metabolic dynamics in fermentation systems. Since the seminal work of Lapin et al. [1,2], progress has been made, mainly in the analysis of CFD data and translation to laboratory setup designs. Different large-scale processes require different analysis methods; in this paper we discuss which analysis methods are best suited for given reactor types, by reviewing prior simulation cases as well as introducing new test cases. Furthermore, we address challenges in the translation from Euler–Lagrange simulations to laboratory scale systems, and propose methods to work around these shortcomings. Based on the current state of the art, we propose guidelines for the selection of data analysis methods, and we discuss the design of rational scale-down simulators. We conclude with a brief discussion regarding the requirements and possibilities of next-generation scale-down simulators, such as microfluidic single-cell analysis, and possible ways to approximate cellular lifelines from invasive intra-cellular measurements.Green Open Access added to TU Delft Institutional Repository ‘You share, we take care!’ – Taverne project https://www.openaccess.nl/en/you-share-we-take-care Otherwise as indicated in the copyright section: the publisher is the copyright holder of this work and the author uses the Dutch legislation to make this work public.ChemE/Transport PhenomenaImPhys/Imaging PhysicsExecutive boardBT/Bioprocess Engineerin

Inter-compartment interaction in multi-impeller mixing: Part I. Experiments and multiple reference frame CFD

CFD simulations of mixing in single-phase multi-Rushton stirred tanks based on the RANS methodology frequently show an over-prediction of the mixing time. This hints at an under-prediction of the mass exchange between the compartments formed around the individual impellers. Some studies recommend tuning the turbulent Schmidt number to address this issue, but this appears to be an ad-hoc correction rather than physical adjustment, thereby compromising the predictive value of the method. In this work, we study the flow profile in between two Rushton impellers in stirred tank. The data hints at the presence of macro-instabilities, and a peak in turbulent kinetic energy in the region of convergent flow, which both may promote inter-compartment mass exchange. CFD studies using the steady-state multiple reference frame model (unsteady simulations are treated in part II) inherently fail to include the macro-instability, and underestimate the turbulent kinetic energy, thereby strongly over-estimating mixing time. Furthermore, the results are highly mesh-sensitive, with increasing mesh density leading to a poorer prediction of the mixing time. Despite proper results for 1-impeller studies, we do not deem MRF-RANS models suitable for mixing studies in multi-impeller geometries.Green Open Access added to TU Delft Institutional Repository ‘You share, we take care!’ – Taverne project https://www.openaccess.nl/en/you-share-we-take-care Otherwise as indicated in the copyright section: the publisher is the copyright holder of this work and the author uses the Dutch legislation to make this work public.ChemE/Transport Phenomen

Downscaling Industrial-Scale Syngas Fermentation to Simulate Frequent and Irregular Dissolved Gas Concentration Shocks

In large-scale syngas fermentation, strong gradients in dissolved gas (CO, H2) concentrations are very likely to occur due to locally varying mass transfer and convection rates. Using Euler-Lagrangian CFD simulations, we analyzed these gradients in an industrial-scale external-loop gas-lift reactor (EL-GLR) for a wide range of biomass concentrations, considering CO inhibition for both CO and H2 uptake. Lifeline analyses showed that micro-organisms are likely to experience frequent (5 to 30 s) oscillations in dissolved gas concentrations with one order of magnitude. From the lifeline analyses, we developed a conceptual scale-down simulator (stirred-tank reactor with varying stirrer speed) to replicate industrial-scale environmental fluctuations at bench scale. The configuration of the scale-down simulator can be adjusted to match a broad range of environmental fluctuations. Our results suggest a preference for industrial operation at high biomass concentrations, as this would strongly reduce inhibitory effects, provide operational flexibility and enhance the product yield. The peaks in dissolved gas concentration were hypothesized to increase the syngas-to-ethanol yield due to the fast uptake mechanisms in C. autoethanogenum. The proposed scale-down simulator can be used to validate such results and to obtain data for parametrizing lumped kinetic metabolic models that describe such short-term responses.</p