Differentially expressed miRNAs in susceptible (rice line MDJ8) and resistance (rice line Rb49) reactions.

<p>Samples were collected before inoculation (ck) and at 2, 4, and 24 h after inoculation of <i>Xoo</i>. A. Number of differentially expressed miRNAs at different times after inoculation of <i>Xoo</i> in Rb49 and MDJ8 compared with corresponding mock-inoculated plants. B. Number of differentially expressed miRNAs in Rb49 compared with MDJ8.</p

The expression of genes was negatively associated with the expression of miRNAs.

<p>Bars (left y axis) represents the expression detected by qRT-PCR, while lines (right y axis) represent the normalized expression detected by Solexa sequencing or the expression by the Genechip analysis. Each bar represents mean (three replicates) ± standard deviation. A, B, C, D, E and F, different pairs of miRNA and gene. The miRNAs were differentially expressed in <i>Xoo</i>-inoculated Rb49 compared with mock-inoculated Rb49 (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0137360#pone.0137360.s007" target="_blank">S5 Table</a>). PCC, Pearson’s correlation coefficient. CK, before <i>Xoo</i> inoculation.</p

The differential expressed siRNAs in susceptible (rice line MDJ8) and resistance (rice line Rb49) reactions.

<p>Samples were collected before inoculation (ck) and at 2, 4, and 24 h after inoculation of <i>Xoo</i>. A. Numbers of differentially expressed siRNAs at different times after inoculation of <i>Xoo</i> in MDJ8 and Rb49 compared with corresponding mock-inoculated plants. B. Number of differentially expressed siRNAs in Rb49 compared with MDJ8.</p

Differentially expressed genes in susceptible (rice line MDJ8) and resistance (rice line Rb49) reactions.

<p>Samples were collected before inoculation (ck) and at 2, 4, and 24 h after inoculation of <i>Xoo</i>. A. Number of differentially expressed genes at different times after inoculation of <i>Xoo</i> in Rb49 and MDJ8 compared with corresponding mock-inoculated plants. B. Number of differentially expressed genes in Rb49 compared with MDJ8.</p

The significantly enriched GO terms in differentially expressed genes in Rb49 compared with MDJ8.

<p>The y axis stands for the name of GO term and x axis stands for rich factor. Q value means the significance of GO term. Rich factor was calculated by the number of genes mapped to the GO term divided by the number of all genes in the input list.</p

The sRNA sequencing reads from rice lines Mudanjiang 8 (MDJ8) and Rb49.

<p>A. The distribution of different sized reads. nt, nucleotide. B. Summary of the common and rice line-specific reads.</p