Ethiopian indigenous goats offer insights into past and recent demographic dynamics and localadaptation in sub-Saharan African goats

Abstract Knowledge on how adaptive evolution and human socio‐cultural and economic interests shaped livestock genomes particularly in sub‐Saharan Africa remains limited. Ethiopia is in a geographic region that has been critical in the history of African agriculture with ancient and diverse human ethnicity and bio‐climatic conditions. Using 52K genome‐wide data analysed in 646 individuals from 13 Ethiopian indigenous goat populations, we observed high levels of genetic variation. Although runs of homozygosity (ROH) were ubiquitous genome‐wide, there were clear differences in patterns of ROH length and abundance and in effective population sizes illustrating differences in genome homozygosity, evolutionary history, and management. Phylogenetic analysis incorporating patterns of genetic differentiation and gene flow with ancestry modelling highlighted past and recent intermixing and possible two deep ancient genetic ancestries that could have been brought by humans with the first introduction of goats in Africa. We observed four strong selection signatures that were specific to Arsi‐Bale and Nubian goats. These signatures overlapped genomic regions with genes associated with morphological, adaptation, reproduction and production traits due possibly to selection under environmental constraints and/or human preferences. The regions also overlapped uncharacterized genes, calling for a comprehensive annotation of the goat genome. Our results provide insights into mechanisms leading to genome variation and differentiation in sub‐Saharan Africa indigenous goats

Relationship of Attributes of Soil and Topography with Land Cover Change in the Rift Valley Basin of Ethiopia

Understanding the spatiotemporal trend of land cover (LC) change and its impact on humans and the environment is essential for decision making and ecosystem conservation. Land degradation generally accelerates overland flow, reducing soil moisture and base flow recharge, and increasing sediment erosion and transport, thereby affecting the entire basin hydrology. In this study, we analyzed watershed-scale processes in the study area, where agriculture and natural shrub land are the dominant LCs. The objective of this study was to assess the time series and spatial patterns of LCC using remotely-sensed data from 1973 to 2018, for which we used six snapshots of satellite images. The LC distribution in relation to watershed characteristics such as topography and soils was also evaluated. For LCC detection analysis, we used Landsat datasets accessed from the United States Geological Survey (USGS) archive, which were processed using remote sensing and Geographic Information System (GIS) techniques. Using these data, four major LC types were identified. The findings of an LC with an overall accuracy above 90% indicates that the area experienced an increase in agricultural LC at the expense of other LC types such as bushland, grazing land, and mixed forest, which attests to the semi-continuous nature of deforestation between 1973 and 2018. In 1973, agricultural land covered only 10% of the watershed, which later expanded to 48.4% in 2018. Bush, forest, and grazing land types, which accounted for 59.7%, 16.7%, and 13.5% of the watershed in 1973, were reduced to 45.2%, 2.3%, and 4.1%, respectively in 2018. As a result, portions of land areas, which had once been covered by pasture, bush, and forest in 1973, were identified as mixed agricultural systems in 2018. Moreover, spatial variability and distribution in LCC is significantly affected by soil type, fertility, and slope. The findings showed the need to reconsider land-use decision tradeoffs between social, economic, and environmental demands