2,689 research outputs found

    The 2.4-A crystal structure of Scapharca dimeric hemoglobin. Cooperativity based on directly communicating hemes at a novel subunit interface.

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    The crystal structure of the cooperative dimeric hemoglobin from the arcid clam, Scapharca inaequivalvis, has been determined in the carbonmonoxy state. The phase problem was solved for reflections with Bragg spacings greater than 3 A using anomalous scattering from the porphyrin iron atoms measured at a single wavelength in combination with molecular averaging. The model built into this electron density map has been refined at 2.4 A resolution by means of stereochemically restrained least squares minimization to a conventional R-value of 0.156. The root mean square deviation from ideal bond lengths and angles are 0.013 A and 1.7 °, respectively. In addition to the 2336 hemoglobin atoms, 214 water molecules have been incorporated into the model. This structure reveals the details of an assemblage of two identical myoglobin-like subunits that is radically different from vertebrate hemoglobins. The subunit interface is formed by direct apposition of the E and F helices, whereas these surfaces are external in vertebrate hemoglobins. The interface has both hydrophobic and hydrophilic character. Two symmetrically related hydrophobic regions are formed between subunits. Six residues are involved in each of these regions that pack tightly enough to exclude water but have only a few atoms in close van der Waals contact. A number of ordered water molecules line the interface and form bridging hydrogen bonds between subunits. Four intersubunit ionic interactions are formed, two of which involve negatively charged propionate groups of the porphyrin. In contrast to cooperative vertebrate hemoglobins, a hydrogen bond network provides a direct route for communication between the two heme groups

    Tunneling Splittings in Mn12-Acetate Single Crystals

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    A Landau-Zener multi-crossing method has been used to investigate the tunnel splittings in high quality Mn12_{12}-acetate single crystals in the pure quantum relaxation regime and for fields applied parallel to the magnetic easy axis. With this method several individual tunneling resonances have been studied over a broad range of time scales. The relaxation is found to be non-exponential and a distribution of tunnel splittings is inferred from the data. The distributions suggest that the inhomogeneity in the tunneling rates is due to disorder that produces a non-zero mean value of the average transverse anisotropy, such as in a solvent disorder model. Further, the effect of intermolecular dipolar interaction on the magnetic relaxation has been studied.Comment: Europhysics Letters (in press). 7 pages, including 3 figure

    Using the Fishes of Texas Project Databases and Recent Collections to Detect Range Expansions by Four Fish Species on the Lower Coastal Plain of Texas

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    The Fishes of Texas project online database is a large, freely available quality controlled fish occurrence database of museum vouchered specimens. We used data from it, the same project’s separate database of occurrences extracted from published literature and our own recent survey data to examine range stability for four fish species inhabiting the Texas Lower Coastal Plain: Fundulus chrysotus, Fundulus jenkinsi, Heterandria formosa and Poecilia formosa. A weakness of our data is that they consist of presences only and species absences can only rarely be inferred. To help adjust for this we used common widespread species as proxies for the four target species by using captures of these proxy species as indicators that the collecting methods used were appropriate to capture the target species, assuming then that large numbers of occurrences of the proxies with contemporaneous absence of the target species in the same samples supports inferences of probable absence of target species. We here report new and previously unpublished occurrences for these species and document westward range expansions for H. formosa and F. chrysotus, an eastward range expansion for P. formosa, and a pattern of possible range contraction and expansion for F. jenkinsi
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