38 research outputs found
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1.
- Author
- Abdel-Aziz AK
- Abdelfatah S
- Abdellatif M
- Abdoli A
- Abel S
- Abeliovich H
- Abildgaard MH
- Abudu YP
- Acevedo-Arozena A
- Adamopoulos IE
- Adeli K
- Adolph TE
- Adornetto A
- Aflaki E
- Agam G
- Agarwal A
- Aggarwal BB
- Agnello M
- Agostinis P
- Agrewala JN
- Agrotis A
- Aguilar PV
- Ahmad ST
- Ahmed ZM
- Ahumada-Castro U
- Aits S
- Aizawa S
- Akkoc Y
- Akoumianaki T
- Akpinar HA
- Al-Abd AM
- Al-Akra L
- Al-Gharaibeh A
- Alaoui-Jamali MA
- Alberti S
- Alcocer-Gómez E
- Alessandri C
- Ali M
- Alim Al-Bari MA
- Aliwaini S
- Alizadeh J
- Almacellas E
- Almasan A
- Alonso A
- Alonso GD
- Altan-Bonnet N
- Altieri DC
- Alves da Costa C
- Alves S
- Alzaharna MM
- Amadio M
- Amantini C
- Amaral C
- Ambrosio S
- Amer AO
- Ammanathan V
- An Z
- Andersen SU
- Andrabi SA
- Andrade-Silva M
- Andres AM
- Angelini S
- Ann D
- Anozie UC
- Ansari MY
- Antas P
- Antebi A
- Antón Z
- Anwar T
- Apetoh L
- Apostolova N
- Araki T
- Araki Y
- Arasaki K
- Araya J
- Araújo WL
- Arden C
- Arguelles S
- Arias E
- Arikkath J
- Arimoto H
- Ariosa AR
- Armstrong-James D
- Arnauné-Pelloquin L
- Aroca A
- Arroyo DS
- Arsov I
- Artero R
- Arévalo M-A
- Asaro DML
- Aschner M
- Ashrafizadeh M
- Ashur-Fabian O
- Atanasov AG
- Au AK
- Auberger P
- Auner HW
- Aurelian L
- Autelli R
- Avagliano L
- Aveic S
- Aveleira CA
- Avin-Wittenberg T
- Aydin Y
- Ayton S
- Ayyadevara S
- Azzopardi M
- Baba M
- Backer JM
- Backues SK
- Bae D-H
- Bae O-N
- Bae SH
- Baehrecke EH
- Baek A
- Baek S-H
- Baek SH
- Bagetta G
- Bagniewska-Zadworna A
- Bai H
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- Bai X
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- Balazadeh S
- Balbi T
- Baldari CT
- Balduini W
- Ballabio A
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- Balzan R
- Bandopadhyay R
- Banerjee S
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- Bao Y
- Baptista MS
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- Barreiro E
- Barreto GE
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- Bartolome A
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- Baulieu EE
- Baumgarner BL
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- Beaumatin F
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- Benito-Cuesta I
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- Besirli CG
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- Betin VM
- Beyaert R
- Bezbradica JS
- Bhaskar K
- Bhatia-Kissova I
- Bhattacharya R
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- Bhattacharyya S
- Bhuiyan MS
- Bhutia SK
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- Biden TJ
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- Brodsky JL
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- Bronstein JM
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- Brown RE
- Brum PC
- Brumell JH
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- Bruno D
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- Buckingham EM
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- Budini M
- Bueno M
- Buitrago-Molina LE
- Bultynck G
- Burada F
- Buraschi S
- Burgoyne JR
- Burón MI
- Bustos V
- Butturini E
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- Büttner S
- Cabas I
- Cabrera-Benitez S
- Cadwell K
- Cai J
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- Calbet JA
- Caldwell GA
- Caldwell KA
- Call JA
- Calvani R
- Calvo AC
- Calvo-Rubio Barrera M
- Camara NO
- Camonis JH
- Camougrand N
- Campanella M
- Campbell EM
- Campbell-Valois F-X
- Campello S
- Campesi I
- Campos JC
- Camuzard O
- Cancino J
- Candido de Almeida D
- Canesi L
- Caniggia I
- Canonico B
- Cantí C
- Cao B
- Caraglia M
- Caramés B
- Carchman EH
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- Cardenas C
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- Cardoso SM
- Carew JS
- Carle GF
- Carleton G
- Carloni S
- Carmona-Gutierrez D
- Carneiro LA
- Carnevali O
- Carosi JM
- Carra S
- Carrier A
- Carrier L
- Carroll B
- Carter AB
- Carvalho AN
- Casanova M
- Casas C
- Casas J
- Cassioli C
- Castillo EF
- Castillo K
- Castillo-Lluva S
- Castoldi F
- Castori M
- Castro AF
- Castro-Caldas M
- Castro-Hernandez J
- Castro-Obregon S
- Catz SD
- Cavadas C
- Cavaliere F
- Cavallini G
- Cavinato M
- Cayuela ML
- Cebollada Rica P
- Cecarini V
- Cecconi F
- Cechowska-Pasko M
- Cenci S
- Ceperuelo-Mallafré V
- Cerqueira JJ
- Cerutti JM
- Cervia D
- Cetintas VB
- Cetrullo S
- Chae H-J
- Chagin AS
- Chai C-Y
- Chakrabarti G
- Chakrabarti O
- Chakraborty T
- Chakraborty T
- Chami M
- Chamilos G
- Chan DW
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- Chan EYW
- Chan H
- Chan HH
- Chan HYE
- Chan MTV
- Chan YS
- Chandra PK
- Chang C
- Chang C-P
- Chang H-C
- Chang K
- Chao J
- Chapman T
- Charlet-Berguerand N
- Chatterjee S
- Chaube SK
- Chaudhary A
- Chauhan S
- Chaum E
- Checler F
- Cheetham ME
- Chen C-S
- Chen G-C
- Chen J-F
- Chen L
- Chen L
- Chen LL
- Chen M
- Chen M-K
- Chen N
- Chen Q
- Chen R-H
- Chen S
- Chen W
- Chen W
- Chen X
- Chen X-M
- Chen X-W
- Chen Y
- Chen Y
- Chen Y
- Chen Y-G
- Chen Y-J
- Chen Y-Q
- Chen Z
- Chen Z
- Chen Z
- Chen Z-H
- Chen ZJ
- Chen ZS
- Cheng H
- Cheng J
- Cheng S-Y
- Cheng W
- Cheng X
- Cheng X-T
- Cheng Y
- Cheng Z
- Cheong H
- Cheong JK
- Chernyak BV
- Cherry S
- Cheung CFR
- Cheung CHA
- Cheung K-H
- Chevet E
- Chi RJ
- Chiang AKS
- Chiaradonna F
- Chiarelli R
- Chiariello M
- Chica N
- Chiocca S
- Chiong M
- Chiou S-H
- Chiramel AI
- Chiurchiù V
- Cho D-H
- Choe S-K
- Choi AMK
- Choi ME
- Choudhury KR
- Chow NS
- Chu CT
- Chua JJE
- Chua JP
- Chung H
- Chung KP
- Chung S
- Chung S-H
- Chung Y-L
- Cianfanelli V
- Ciechomska IA
- Cifuentes M
- Cinque L
- Cirak S
- Cirone M
- Clague MJ
- Clarke R
- Clementi E
- Coccia EM
- Codogno P
- Cohen E
- Cohen MM
- Colasanti T
- Colasuonno F
- Colbert RA
- Colell A
- Coll NS
- Collins MO
- Colombo MI
- Colón-Ramos DA
- Combaret L
- Comincini S
- Cominetti MR
- Consiglio A
- Conte A
- Conti F
- Contu VR
- Cookson MR
- Coombs KM
- Coppens I
- Corasaniti MT
- Cordes N
- Corkery DP
- Cortese K
- Costa MDC
- Costantino S
- Costelli P
- Coto-Montes A
- Crack PJ
- Crespo JL
- Criollo A
- Crippa V
- Cristofani R
- Csizmadia T
- Cuadrado A
- Cui B
- Cui J
- Cui Y
- Cui Y
- Culetto E
- Cumino AC
- Cybulsky AV
- Czaja MJ
- Czuczwar SJ
- D'Adamo S
- D'Amelio M
- D'Arcangelo D
- D'Lugos AC
- D'Orazi G
- da Silva JA
- Dafsari HS
- Dagda RK
- Dagdas Y
- Daglia M
- Dai X
- Dai Y
- Dai Y
- Dal Col J
- Dalhaimer P
- Dalla Valle L
- Dallenga T
- Dalmasso G
- Damme M
- Dando I
- Dantuma NP
- Darling AL
- Das H
- Dasarathy S
- Dasari SK
- Dash S
- Daumke O
- Dauphinee AN
- Davies JS
- Davis RJ
- Davis T
- Dayalan Naidu S
- De Amicis F
- De Bosscher K
- De Felice F
- De Franceschi L
- De Leonibus C
- de Mattos Barbosa MG
- De Meyer GRY
- De Milito A
- De Nunzio C
- De Palma C
- De Santi M
- De Virgilio C
- De Zio D
- Debnath J
- DeBosch BJ
- Decuypere J-P
- Deehan MA
- Deflorian G
- DeGregori J
- Dehay B
- Del Rio G
- Delaney JR
- Delbridge LMD
- Delorme-Axford E
- Delpino MV
- Demarchi F
- Dembitz V
- Demers ND
- Deng H
- Deng Z
- Dengjel J
- Dent P
- Denton D
- DePamphilis ML
- Der CJ
- Deretic V
- Descoteaux A
- Devis L
- Devkota S
- Devuyst O
- Dewson G
- Dharmasivam M
- Dhiman R
- di Bernardo D
- Di Cristina M
- Di Domenico F
- Di Fazio P
- Di Fonzo A
- Di Guardo G
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- Di Leo L
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- Di Nardo A
- Di Rienzo M
- Di Sano F
- Diallinas G
- Diao J
- Diaz-Araya G
- Dickinson JM
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- Dikic I
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- Dinic M
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- Dinkova-Kostova AT
- Dionne MS
- Distler JHW
- Diwan A
- Dixon IMC
- Djavaheri-Mergny M
- Dobrinski I
- Dobrovinskaya O
- Dobrowolski R
- Dobson RCJ
- Dokmeci Emre S
- Donadelli M
- Dong B
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- Dou H
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- Dunlop EA
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- Dyshlovoy SA
- Dávila VA
- Díaz-Laviada I
- Ebrahimi-Fakhari D
- Eckhart L
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- Emerling BM
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- Figueras A
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- Fliesler SJ
- Flo TH
- Florance I
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- Fodor E
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- Frankel LB
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- Keulers TG
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- Kim DR
- Kim E-K
- Kim EY
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- Villalba JM
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- Viscomi MT
- Visnjic D
- Vitale I
- Vocadlo DJ
- Voitsekhovskaja OV
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- Von Haefen C
- Vooijs MA
- Voos W
- Vucicevic L
- Wade-Martins R
- Waguri S
- Waite KA
- Wakatsuki S
- Walker DW
- Walker MJ
- Walker SA
- Walter J
- Wandosell FG
- Wang B
- Wang C
- Wang C
- Wang C
- Wang C-Y
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- Wang D
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- Wang P
- Wang Q
- Wang QA
- Wang QJ
- Wang QK
- Wang W
- Wang W-T
- Wang X
- Wang X
- Wang Y
- Wang Y
- Wang Y
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- Wang Y
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- Wang Y
- Wang Y-Y
- Wang Z
- Wang Z
- Wang Z
- Warnes G
- Warnsmann V
- Watada H
- Watanabe E
- Watchon M
- Wawrzyńska A
- Weaver TE
- Wegrzyn G
- Wehman AM
- Wei H
- Wei L
- Wei T
- Wei Y
- Weiergräber OH
- Weihl CC
- Weindl G
- Weiskirchen R
- Wells A
- Wen RH
- Wen X
- Werner A
- Weykopf B
- Wheatley SP
- Whitton JL
- Whitworth AJ
- Wiktorska K
- Wildenberg ME
- Wileman T
- Wilkinson S
- Willbold D
- Williams B
- Williams RL
- Williams RSB
- Williamson PR
- Wilson RA
- Winner B
- Winsor NJ
- Witkin SS
- Wodrich H
- Woehlbier U
- Wollert T
- Wong E
- Wong JH
- Wong RW
- Wong VKW
- Wong WW-L
- Wu A-G
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- Wu S-Y
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- Wu WKK
- Wu X
- Wu X
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- Wu Y-W
- Xavier RJ
- Xia H
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- Xiang G
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- Xiang M
- Xiang W
- Xiao B
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- Xiao H-T
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- Xilouri M
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- Xu J
- Xu J
- Xu L
- Xu WW
- Xu X
- Xue Y
- Yakhine-Diop SMS
- Yamaguchi M
- Yamaguchi O
- Yamamoto A
- Yamashina S
- Yan S
- Yan S-J
- Yan Z
- Yanagi Y
- Yang C
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- Yang H-T
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- Yang J-M
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- Yang P-M
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- Yang S
- Yang S
- Yang S-F
- Yang W
- Yang WY
- Yang X
- Yang X
- Yang Y
- Yang Y
- Yao H
- Yao S
- Yao X
- Yao Y-G
- Yao Y-M
- Yasui T
- Yazdankhah M
- Yen PM
- Yi C
- Yi-Ren Hong C-WH
- Yin X-M
- Yin Y
- Yin Z
- Yin Z
- Ying M
- Ying Z
- Yip CK
- Yiu SPT
- Yoo YH
- Yoshida K
- Yoshii SR
- Yoshimori T
- Yousefi B
- Yu B
- Yu H
- Yu J
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- Yu M-L
- Yu S-W
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- Yu WH
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- Yue J
- Yue Z
- Yun J
- Yung RL
- Zacks DN
- Zaffagnini G
- Zambelli VO
- Zanella I
- Zang QS
- Zanivan S
- Zappavigna S
- Zaragoza P
- Zarbalis KS
- Zarebkohan A
- Zarrouk A
- Zeitlin SO
- Zeng J
- Zeng J-D
- Zhan L
- Zhang B
- Zhang DD
- Zhang H
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- Zhang H
- Zhang H
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- Zhang H
- Zhang H
- Zhang H-L
- Zhang J
- Zhang J
- Zhang J-P
- Zhang KYB
- Zhang L
- Zhang L
- Zhang L
- Zhang L
- Zhang LW
- Zhang M
- Zhang P
- Zhang S
- Zhang W
- Zhang X
- Zhang X
- Zhang X
- Zhang X
- Zhang X
- Zhang X-W
- Zhang XD
- Zhang Y
- Zhang Y
- Zhang Y
- Zhang Y
- Zhang Y
- Zhang Y-D
- Zhang Y-Y
- Zhang Z
- Zhang Z
- Zhang Z
- Zhang Z
- Zhang Z
- Zhang Z
- Zhao H
- Zhao L
- Zhao S
- Zhao T
- Zhao X-F
- Zhao Y
- Zhao Y
- Zhao Y
- Zhao Y
- Zheng G
- Zheng K
- Zheng L
- Zheng S
- Zheng X-L
- Zheng Y
- Zheng Z-G
- Zhivotovsky B
- Zhong Q
- Zhou A
- Zhou B
- Zhou C
- Zhou G
- Zhou H
- Zhou H
- Zhou H
- Zhou J
- Zhou J
- Zhou J
- Zhou J
- Zhou K
- Zhou R
- Zhou X-J
- Zhou Y
- Zhou Y
- Zhou Y
- Zhou Z
- Zhou Z-Y
- Zhu B
- Zhu C
- Zhu G-Q
- Zhu H
- Zhu H
- Zhu H
- Zhu W-G
- Zhu Y
- Zhu Y
- Zhuang H
- Zhuang X
- Zientara-Rytter K
- Zimmermann CM
- Ziviani E
- Zoladek T
- Zong W-X
- Zorov DB
- Zorzano A
- Zou W
- Zou Z
- Zou Z
- Zuryn S
- Zwerschke W
- Álvarez ÉMC
- Ávalos Y
- Önal G
- Üstün S
- Čolić M
- Đokić J
- Žerovnik E
- Publication venue
- 'Informa UK Limited'
- Publication date
- 01/01/2021
- Field of study
In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field
The Na+/glucose cotransporters: from genes to therapy
- Author
- A. David-Silva
- Arakawa K
- Balakrishnan A
- Bell GI
- Campbell MJ
- Carriere V
- Conner S
- Courtois G
- Crane RK
- Diez-Sampedro A
- Diez-Sampedro A
- Diez-Sampedro A
- Dyer J
- Dyer J
- D’Agord SB
- Elsas LJ
- Freitas HS
- Freitas HS
- Freitas HS
- Friedlander G
- Gagnon MP
- Gautier-Stein A
- H.S. Freitas
- Han S
- Haspel HC
- Hayashi Y
- Hediger MA
- Hirsch JR
- Hirschhorn N
- Idris I
- Ishikawa Y
- Jabbour SA
- Kamran M
- Kong CT
- Lescale-Matys L
- Loo DD
- M.M. Okamoto
- Machado UF
- Mackenzie B
- Margolskee RF
- Martin MG
- Melin K
- Meng W
- Murrah VA
- Nath KA
- Oku A
- Pontoglio M
- Pontoglio M
- R. Sabino-Silva
- R.C. Mori
- Rhoads DB
- Sabino-Silva R
- Santer R
- Solberg DH
- Turk E
- Turk E
- U.F. Machado
- Vayro S
- Vestri S
- Wan C
- Wells RG
- Wood IS
- Wright EM
- Zeuthen T
- Zhao FQ
- Zhou L
- Publication venue
- 'FapUNIFESP (SciELO)'
- Publication date
- Field of study
Active specific immunotherapy: Using tumor heterogeneity to successfully fight cancer
- Publication venue
- 'Informa UK Limited'
- Publication date
- Field of study
Glucose uptake and glycogen levels are increased in pig heart after repetitive ischemia
- Author
- Publication venue
- 'American Physiological Society'
- Publication date
- Field of study
Stochastic blockmodeling of the modules and core of the caenorhabditis elegans connectome
- Author
- AF Alexander-Bloch
- B Chen
- B Karrer
- C Anderson
- C Fraley
- D Harville
- D Meunier
- DQ Vu
- Dragana M. Pavlovic
- E Bullmore
- E Gilbert
- E Ravasz
- E Ravasz
- Edward T. Bullmore
- EK Towlson
- ET Bullmore
- F Lorrain
- G Haspel
- G Haspel
- Gennady Cymbalyuk
- H Akaike
- H Zanghi
- HC White
- J Daudin
- J Handl
- J White
- KP Burnham
- L Hubert
- L Morey
- L Royer
- L Varshney
- M Jordan
- M Molloy
- M Newman
- M Newman
- M Newman
- M Newman
- M Rubinov
- P Dicken
- P Erdős
- P Holme
- P Latouche
- Petra E. Vértes
- PW Holland
- R Albert
- R Pan
- RE Ulanowicz
- S Brenner
- S Fortunato
- S Fortunato
- S Mukherjee
- S Varier
- SE Von Stetina
- SP Borgatti
- T Jaakkola
- T Snijders
- Thomas E. Nichols
- V Blondel
- W Rand
- William R. Schafer
- WW Zachary
- Y Wang
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- 02/07/2014
- Field of study
Recently, there has been much interest in the community structure or mesoscale organization of complex networks. This structure is characterised either as a set of sparsely inter-connected modules or as a highly connected core with a sparsely connected periphery. However, it is often difficult to disambiguate these two types of mesoscale structure or, indeed, to summarise the full network in terms of the relationships between its mesoscale constituents. Here, we estimate a community structure with a stochastic blockmodel approach, the Erdős-Rényi Mixture Model, and compare it to the much more widely used deterministic methods, such as the Louvain and Spectral algorithms. We used the Caenorhabditis elegans (C. elegans) nervous system (connectome) as a model system in which biological knowledge about each node or neuron can be used to validate the functional relevance of the communities obtained. The deterministic algorithms derived communities with 4–5 modules, defined by sparse inter-connectivity between all modules. In contrast, the stochastic Erdős-Rényi Mixture Model estimated a community with 9 blocks or groups which comprised a similar set of modules but also included a clearly defined core, made of 2 small groups. We show that the “core-in-modules” decomposition of the worm brain network, estimated by the Erdős-Rényi Mixture Model, is more compatible with prior biological knowledge about the C. elegans nervous system than the purely modular decomposition defined deterministically. We also show that the blockmodel can be used both to generate stochastic realisations (simulations) of the biological connectome, and to compress network into a small number of super-nodes and their connectivity. We expect that the Erdős-Rényi Mixture Model may be useful for investigating the complex community structures in other (nervous) systems
Hexose specificity for downregulation of HepG2/brain-type glucose transporter gene expression in L6 myocytes
- Author
- A Franchi
- A Klip
- A Kosaki
- AG Herreros de
- B Thorens
- BJ Rollins
- D Yaffe
- DA Young
- DB Ullrey
- DE James
- DW Salter
- EA Richter
- F Maher
- H Baumann
- H Fukumoto
- H Gershman
- HC Haspel
- HC Haspel
- HC Haspel
- HC Haspel
- J Berger
- JE Pessin
- JI Rearick
- JPM Putten van
- K Yamada
- LK Shawver
- M Mueckler
- MJ Birnbaum
- MJ Charron
- MJ Morgan
- NM Gough
- OM Rosen
- PS Walker
- PS Walker
- RB Pepinsky
- RF Kletzien
- RJ Germinario
- RJ Germinario
- S Sasson
- S Sasson
- SK Lemmon
- SR Chen
- T D'Amore
- T D'Amore
- T Kayano
- TA Musliner
- WI Sivitz
- WT Garvey
- Y Hiraki
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Insulin-regulatable tissues express a unique insulin-sensitive glucose transport protein
- Author
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Microheterogeneity of the carbohydrate moiety of the human erythrocyte glucose transporter
- Author
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/01/1990
- Field of study
Tracheotomy in Cancer Patients: Experience from a Cancer Hospital in Pakistan
- Author
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Development and Characterization of Human Monoclonal Antibodies and Their Application in the Radioimmunodetection of Colon Carcinoma
- Author
- A Hedin
- A Iman
- AA Epenetos
- AA Epenetos
- B Ballou
- B Ballou
- B Ballou
- C Berche
- D Herlyn
- D Hyams
- DL Shawler
- DM Goldenberg
- DS Reintgen
- HC Hoover Jr.
- HC Hoover Jr.
- HF Dvorak
- HF Sears
- HV Pimm
- J Schlom
- J Sikora
- JA Carrasquillo
- JC Reynolds
- JF Chatal
- JP Mach
- K Sikora
- LC Peters
- LC Peters
- LK Sun
- MG Hanna Jr.
- MG Hanna Jr.
- MV Haspel
- NC Armitage
- PJ Moldofsky
- PL Hagan
- R Levy
- RJ Cote
- RK Oldham
- RM Rainsbury
- RW Baldwin
- RW Schroff
- SL Morrison
- SM Larson
- T Maillet
- T Nakamura
- WF Barth
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/01/1988
- Field of study