58 research outputs found
Markov analysis of stochastic resonance in a periodically driven integrate-fire neuron
We model the dynamics of the leaky integrate-fire neuron under periodic
stimulation as a Markov process with respect to the stimulus phase. This avoids
the unrealistic assumption of a stimulus reset after each spike made in earlier
work and thus solves the long-standing reset problem. The neuron exhibits
stochastic resonance, both with respect to input noise intensity and stimulus
frequency. The latter resonance arises by matching the stimulus frequency to
the refractory time of the neuron. The Markov approach can be generalized to
other periodically driven stochastic processes containing a reset mechanism.Comment: 23 pages, 10 figure
Switching Time Statistics for Driven Neuron Models: Analytic Expressions versus Numerics
Analytical expressions are put forward to investigate the forced spiking
activity of abstract neuron models such as the driven leaky integrate-and-fire
(LIF) model. The method is valid in a wide parameter regime beyond the
restraining limits of weak driving (linear response) and/or weak noise. The
novel approximation is based on a discrete state Markovian modeling of the full
dynamics with time-dependent rates. The scheme yields very good agreement with
numerical Langevin and Fokker-Planck simulations of the full non-stationary
dynamics for both, the first-passage time statistics and the interspike
interval (residence time) distributions.Comment: 4 pages, 4 figures, RevTeX4 used, final versio
Mesonic Chiral Rings in Calabi-Yau Cones from Field Theory
We study the half-BPS mesonic chiral ring of the N=1 superconformal quiver
theories arising from N D3-branes stacked at Y^pq and L^abc Calabi-Yau conical
singularities. We map each gauge invariant operator represented on the quiver
as an irreducible loop adjoint at some node, to an invariant monomial, modulo
relations, in the gauged linear sigma model describing the corresponding bulk
geometry. This map enables us to write a partition function at finite N over
mesonic half-BPS states. It agrees with the bulk gravity interpretation of
chiral ring states as cohomologically trivial giant gravitons. The quiver
theories for L^aba, which have singular base geometries, contain extra
operators not counted by the naive bulk partition function. These extra
operators have a natural interpretation in terms of twisted states localized at
the orbifold-like singularities in the bulk.Comment: Latex, 25pgs, 12 figs, v2: minor clarification
Stochastic Resonance of Ensemble Neurons for Transient Spike Trains: A Wavelet Analysis
By using the wavelet transformation (WT), we have analyzed the response of an
ensemble of (=1, 10, 100 and 500) Hodgkin-Huxley (HH) neurons to {\it
transient} -pulse spike trains () with independent Gaussian noises.
The cross-correlation between the input and output signals is expressed in
terms of the WT expansion coefficients. The signal-to-noise ratio (SNR) is
evaluated by using the {\it denoising} method within the WT, by which the noise
contribution is extracted from output signals. Although the response of a
single (N=1) neuron to sub-threshold transient signals with noises is quite
unreliable, the transmission fidelity assessed by the cross-correlation and SNR
is shown to be much improved by increasing the value of : a population of
neurons play an indispensable role in the stochastic resonance (SR) for
transient spike inputs. It is also shown that in a large-scale ensemble, the
transmission fidelity for supra-threshold transient spikes is not significantly
degraded by a weak noise which is responsible to SR for sub-threshold inputs.Comment: 20 pages, 4 figure
Why Are Computational Neuroscience and Systems Biology So Separate?
Despite similar computational approaches, there is surprisingly little interaction between the computational neuroscience and the systems biology research communities. In this review I reconstruct the history of the two disciplines and show that this may explain why they grew up apart. The separation is a pity, as both fields can learn quite a bit from each other. Several examples are given, covering sociological, software technical, and methodological aspects. Systems biology is a better organized community which is very effective at sharing resources, while computational neuroscience has more experience in multiscale modeling and the analysis of information processing by biological systems. Finally, I speculate about how the relationship between the two fields may evolve in the near future
Balancing Feed-Forward Excitation and Inhibition via Hebbian Inhibitory Synaptic Plasticity
It has been suggested that excitatory and inhibitory inputs to cortical cells are balanced, and that this balance is important for the highly irregular firing observed in the cortex. There are two hypotheses as to the origin of this balance. One assumes that it results from a stable solution of the recurrent neuronal dynamics. This model can account for a balance of steady state excitation and inhibition without fine tuning of parameters, but not for transient inputs. The second hypothesis suggests that the feed forward excitatory and inhibitory inputs to a postsynaptic cell are already balanced. This latter hypothesis thus does account for the balance of transient inputs. However, it remains unclear what mechanism underlies the fine tuning required for balancing feed forward excitatory and inhibitory inputs. Here we investigated whether inhibitory synaptic plasticity is responsible for the balance of transient feed forward excitation and inhibition. We address this issue in the framework of a model characterizing the stochastic dynamics of temporally anti-symmetric Hebbian spike timing dependent plasticity of feed forward excitatory and inhibitory synaptic inputs to a single post-synaptic cell. Our analysis shows that inhibitory Hebbian plasticity generates ‘negative feedback’ that balances excitation and inhibition, which contrasts with the ‘positive feedback’ of excitatory Hebbian synaptic plasticity. As a result, this balance may increase the sensitivity of the learning dynamics to the correlation structure of the excitatory inputs
A reafferent and feed-forward model of song syntax generation in the Bengalese finch
Adult Bengalese finches generate a variable song that obeys a distinct and individual syntax. The syntax is gradually lost over a period of days after deafening and is recovered when hearing is restored. We present a spiking neuronal network model of the song syntax generation and its loss, based on the assumption that the syntax is stored in reafferent connections from the auditory to the motor control area. Propagating synfire activity in the HVC codes for individual syllables of the song and priming signals from the auditory network reduce the competition between syllables to allow only those transitions that are permitted by the syntax. Both imprinting of song syntax within HVC and the interaction of the reafferent signal with an efference copy of the motor command are sufficient to explain the gradual loss of syntax in the absence of auditory feedback. The model also reproduces for the first time experimental findings on the influence of altered auditory feedback on the song syntax generation, and predicts song- and species-specific low frequency components in the LFP. This study illustrates how sequential compositionality following a defined syntax can be realized in networks of spiking neurons
- …