Composition and dynamic of benthic macroinvertebrates community in semi-arid area rivers of Burkina Faso (West Africa)

The benthic macroinvertebrates communities dynamic were investigated in rivers from Burkina Faso in the purpose to analyze the taxonomic composition, the structure of benthic macroinvertebrates community and the composite environmental variables that correspond to the major distribution patterns of this community. The results showed that a total of 132 taxa was recorded and the large majority of these (103 taxa) belonged to 57 families from 8 orders of insects that represent 95% of relative abundance. We also observed some distinct differences relative to the spatial and temporal variation in the taxonomic composition. The canonical correspondance analysis (CCA) revealed a strong correlationship between Chironomidae, Syrphidae, Culicidae, Psychodidae, as well as the Pulmonates molluscs and organic nutriments feeding dynamics. These findings showed the sensitivity of benthic macroinvertebrates at different level: sensitivity which could be attributable to man-induced activities.© 2016 International Formulae Group. All rights reserved.Keywords: Benthic macroinvertebrates, enviromental variables, dynamic, Burkina Fas

Allelic and genotypic frequencies of ASIP and MC1R genes in four West African sheep populations

In West Africa, consumers pay a major attention on the coat colour of the sheep due to religious and cultural reasons. White coated individuals reach selling prices up to three-fold higher than black coated sheep. The aim of this study was to ascertain the genotypic and allelic frequencies of MC1R and ASIP genes in order to assess possible implementation of breeding programmes focusing on the increase of the white coated sheep frequencies. A total of 113 individuals belonging to three Burkina Faso sheep breeds (Burkina-Sahel, Djallonké and Mossi) and one Niger sheep breed (Touareg) were genotyped for the MC1R and ASIP genes. The wild allele of the ASIP gene (Awt; 54.30%) was the most frequent in the four West African sheep, particularly in Burkina-Sahel (85%) and Touareg breeds (80%). The dominant black ED allele was not identified in Burkina-Sahel and Touareg. Most of the analysed individuals were homozygous for wild MC1R allele (E+/E+) with 100, 73.5, 59 and 100% frequency in Burkina-Sahel, Djallonké, Mossi and Touareg, respectively. The Awt/Awt was the most frequent genotype on the ASIP gene in the four West African breeds (80.53%). No individuals were homozygous for the deletion (allele Adel). Although, no routine methods for detection of the genetic basis of the recessive black coat colour patterns can be easily implemented, the current results suggest the feasibility of a selection programme aiming at decreasing the frequencies of the dominant black ED allele in Burkina Faso sheep breeds.Key words: Sheep, coat colour, MC1R gene, ASIP gene, Burkina Faso, Niger

Untreated Human Infections by Trypanosoma brucei gambiense Are Not 100% Fatal

The final outcome of infection by Trypanosoma brucei gambiense, the main agent of sleeping sickness, has always been considered as invariably fatal. While scarce and old reports have mentioned cases of self-cure in untreated patients, these studies suffered from the lack of accurate diagnostic tools available at that time. Here, using the most specific and sensitive tools available to date, we report on a long-term follow-up (15 years) of a cohort of 50 human African trypanosomiasis (HAT) patients from the Ivory Coast among whom 11 refused treatment after their initial diagnosis. In 10 out of 11 subjects who continued to refuse treatment despite repeated visits, parasite clearance was observed using both microscopy and polymerase chain reaction (PCR). Most of these subjects (7/10) also displayed decreasing serological responses, becoming progressively negative to trypanosome variable antigens (LiTat 1.3, 1.5 and 1.6). Hence, in addition to the “classic” lethal outcome of HAT, we show that alternative natural progressions of HAT may occur: progression to an apparently aparasitaemic and asymptomatic infection associated with strong long-lasting serological responses and progression to an apparently spontaneous resolution of infection (with negative results in parasitological tests and PCR) associated with a progressive drop in antibody titres as observed in treated cases. While this study does not precisely estimate the frequency of the alternative courses for this infection, it is noteworthy that in the field national control programs encounter a significant proportion of subjects displaying positive serologic test results but negative results in parasitological testing. These findings demonstrate that a number of these subjects display such infection courses. From our point of view, recognising that trypanotolerance exists in humans, as is now widely accepted for animals, is a major step forward for future research in the field of HAT

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

INTRODUCTION Investment in Africa over the past year with regard to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing has led to a massive increase in the number of sequences, which, to date, exceeds 100,000 sequences generated to track the pandemic on the continent. These sequences have profoundly affected how public health officials in Africa have navigated the COVID-19 pandemic. RATIONALE We demonstrate how the first 100,000 SARS-CoV-2 sequences from Africa have helped monitor the epidemic on the continent, how genomic surveillance expanded over the course of the pandemic, and how we adapted our sequencing methods to deal with an evolving virus. Finally, we also examine how viral lineages have spread across the continent in a phylogeographic framework to gain insights into the underlying temporal and spatial transmission dynamics for several variants of concern (VOCs). RESULTS Our results indicate that the number of countries in Africa that can sequence the virus within their own borders is growing and that this is coupled with a shorter turnaround time from the time of sampling to sequence submission. Ongoing evolution necessitated the continual updating of primer sets, and, as a result, eight primer sets were designed in tandem with viral evolution and used to ensure effective sequencing of the virus. The pandemic unfolded through multiple waves of infection that were each driven by distinct genetic lineages, with B.1-like ancestral strains associated with the first pandemic wave of infections in 2020. Successive waves on the continent were fueled by different VOCs, with Alpha and Beta cocirculating in distinct spatial patterns during the second wave and Delta and Omicron affecting the whole continent during the third and fourth waves, respectively. Phylogeographic reconstruction points toward distinct differences in viral importation and exportation patterns associated with the Alpha, Beta, Delta, and Omicron variants and subvariants, when considering both Africa versus the rest of the world and viral dissemination within the continent. Our epidemiological and phylogenetic inferences therefore underscore the heterogeneous nature of the pandemic on the continent and highlight key insights and challenges, for instance, recognizing the limitations of low testing proportions. We also highlight the early warning capacity that genomic surveillance in Africa has had for the rest of the world with the detection of new lineages and variants, the most recent being the characterization of various Omicron subvariants. CONCLUSION Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve. This is important not only to help combat SARS-CoV-2 on the continent but also because it can be used as a platform to help address the many emerging and reemerging infectious disease threats in Africa. In particular, capacity building for local sequencing within countries or within the continent should be prioritized because this is generally associated with shorter turnaround times, providing the most benefit to local public health authorities tasked with pandemic response and mitigation and allowing for the fastest reaction to localized outbreaks. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century