Phylogenomic tree of Rhizobiales bacteria

Supplementary file associated with Tagirdzhanova et al. 2023. A global survey of lichen symbionts from metagenomes Maximum likelihood phylogenetic tree of Rhizobiales.  The tree includes published genomes of Rhizobiales and Rhizobiales MAGs derived from lichen metagenomes (indicated in red). We generated the alignment of 120 marker genes using GTDB-Tk, and calculated the tree using IQ-TREE.   Includes two files:  1. rhizobiales.contree: treefile in Newick format 2. rhizobiales_annotated_tree.svg: annotated tree showing the taxonomic assignments of the genomes and presence/absence of genes related to nitrogen fixing and C1 metabolism</p

Phylogenomic trees of MAGs isolated from lichen metagenomes

Supplementary files associated with Tagirdzhanova et al. 2023. A global survey of lichen symbionts from metagenomes Maximum likelihood phylogenetic trees of the MAGs isolated from lichen metagenomes.  Includes three files:  1. bacterial.treefile  This tree was calculated using IQ-TREE and are based on alignments of marker genes (for prokaryotes: 120 marker genes from GTDB-Tk). 2. fungal.treefile 3. algal.treefile These two trees were calculated using the Phylociraptor pipeline. The trees were based on 1296 genes in algae and 709 genes in fungi. Concatenated phylogenies were calculated using IQ-TREE</p