MOESM1 of A high-throughput phenotyping procedure for evaluation of antixenosis against common cutworm at early seedling stage in soybean

Additional file 1: Table S1. The DLPs of all accessions at all evaluation dates in Test 1 and Test 2 of Experiment 1

Pointwise power under different block variances.

<p>The arrow size and direction represent the approximate effect size and direction of a QTL, respectively. (A) <i>δ</i> = 0.5; (B) <i>δ</i> = 1; (C) <i>δ</i> = 5; (D) <i>δ</i> = 10. <i>δ</i> represents the size of the block variance and is defined as </p><p></p><p></p><p><mi>δ</mi><mo>=</mo></p><p><mi>σ</mi><mi>b</mi><mn>2</mn></p><mo>/</mo><p><mi>σ</mi><mn>2</mn></p><p></p><p></p><p></p>, where <i>σ</i>² is the error variance and <p></p><p></p><p></p><p><mi>σ</mi><mi>b</mi><mn>2</mn></p><p></p><p></p><p></p> is the variance of a block within the replication. Pointwise power was calculated as the proportion of replications whose LOD score at each testing position was greater than the threshold determined by a permutation test with 1000 replications.<p></p

The power of QTL detection for each QTL under different block variances.

<p>(A) <i>δ</i> = 0.5; (B) <i>δ</i> = 1; (C) <i>δ</i> = 5; (D) <i>δ</i> = 10. <i>δ</i> represents the size of the block variance and is defined as </p><p></p><p></p><p><mi>δ</mi><mo>=</mo></p><p><mi>σ</mi><mi>b</mi><mn>2</mn></p><mo>/</mo><p><mi>σ</mi><mn>2</mn></p><p></p><p></p><p></p>, where <i>σ</i>² is the error variance and <p></p><p></p><p></p><p><mi>σ</mi><mi>b</mi><mn>2</mn></p><p></p><p></p><p></p> is the variance of a block within the replication. For the purpose of computing the detection power, a predefined QTL counted as detected if at least one QTL was found within a 10 cM window centered at the true QTL. A permutation test with 1000 replications was used to determine the threshold.<p></p

Genome-wide LOD profile for biomass in a population of 184 soybean RILs.

<p>G, LOD score of the additive effect; GxE, LOD score of the additive-environment interaction effect; Join, LOD score of the joint additive and additive-environment interaction effects. Dashed lines are thresholds obtained by a permutation test with 1000 replications.</p

Average LOD scores across 100 replications under different block variances.

<p>The arrow size and direction represent the approximate effect size and direction of a QTL, respectively. (A) <i>δ</i> = 0.5; (B) <i>δ</i> = 1; (C) <i>δ</i> = 5; (D) <i>δ</i> = 10. <i>δ</i> represents the size of the block variance and is defined as </p><p></p><p></p><p><mi>δ</mi><mo>=</mo></p><p><mi>σ</mi><mi>b</mi><mn>2</mn></p><mo>/</mo><p><mi>σ</mi><mn>2</mn></p><p></p><p></p><p></p>, where <i>σ</i>² is the error variance and <p></p><p></p><p></p><p><mi>σ</mi><mi>b</mi><mn>2</mn></p><p></p><p></p><p></p> is the variance of a block within the replication.<p></p