NFU-Enabled FASTA: moving bioinformatics applications onto wide area networks-4

<p><b>Copyright information:</b></p><p>Taken from "NFU-Enabled FASTA: moving bioinformatics applications onto wide area networks"</p><p>http://www.scfbm.org/content/2/1/8</p><p>Source Code for Biology and Medicine 2007;2():8-8.</p><p>Published online 26 Nov 2007</p><p>PMCID:PMC2211279.</p><p></p>handled by the server using the LoRS upload tool and associated XND files to catalog distributed database location and replicate. Following a request for execution, the server retrieves the query file from the client and uploads the query file and modified FASTA executable onto NFU-enabled storage depots where the appropriate database chunks reside. The FASTA results are download directly from the network, modified if necessary, and returned to the client

NFU-Enabled FASTA: moving bioinformatics applications onto wide area networks-3

<p><b>Copyright information:</b></p><p>Taken from "NFU-Enabled FASTA: moving bioinformatics applications onto wide area networks"</p><p>http://www.scfbm.org/content/2/1/8</p><p>Source Code for Biology and Medicine 2007;2():8-8.</p><p>Published online 26 Nov 2007</p><p>PMCID:PMC2211279.</p><p></p>into remote FASTA application. Briefly, a shared FASTA library file is created by stripping out the FASTA algorithm and histogram creation portions from the FASTA package and converting them to a static shared library. Since the NFU computation service enabled on the IBP depots is implemented in the C programming language, the transformation of FASTA code to shared library files is also implemented in C

NFU-Enabled FASTA: moving bioinformatics applications onto wide area networks-7

<p><b>Copyright information:</b></p><p>Taken from "NFU-Enabled FASTA: moving bioinformatics applications onto wide area networks"</p><p>http://www.scfbm.org/content/2/1/8</p><p>Source Code for Biology and Medicine 2007;2():8-8.</p><p>Published online 26 Nov 2007</p><p>PMCID:PMC2211279.</p><p></p>into remote FASTA application. Briefly, a shared FASTA library file is created by stripping out the FASTA algorithm and histogram creation portions from the FASTA package and converting them to a static shared library. Since the NFU computation service enabled on the IBP depots is implemented in the C programming language, the transformation of FASTA code to shared library files is also implemented in C

NFU-Enabled FASTA: moving bioinformatics applications onto wide area networks-6

<p><b>Copyright information:</b></p><p>Taken from "NFU-Enabled FASTA: moving bioinformatics applications onto wide area networks"</p><p>http://www.scfbm.org/content/2/1/8</p><p>Source Code for Biology and Medicine 2007;2():8-8.</p><p>Published online 26 Nov 2007</p><p>PMCID:PMC2211279.</p><p></p>a database. The chunk is replicated and fragmented depending on the parameters given to the upload tool before being stored in the IBP network as IBP allocations. (B) The DBList maintains a list of all the databases that have been uploaded and are available, and the information associated with them (e.g., the no of chunks, the list of xnd files, etc)