Additional file 6: Figure S4. of Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

Manhattan plot for casein % for the within breed analysis (black and grey closed dots: Danish Holstein; green/blue closed dotes: Danish Jersey) and the meta-analysis (pink and red closed dots). The horizontal dashed line represents FDR < 0.10 significance level. On the x-axis the chromosomes are represented. On the y-axis the –log10 (P-value) is presented. (PNG 14 kb

Additional file 7: Figure S5. of Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

Manhattan plot for αS2-CN% for the within breed analysis (black and grey closed dots: Danish Holstein; green/blue closed dotes: Danish Jersey) and the meta-analysis (pink and red closed dots). The horizontal dashed line represents FDR < 0.10 significance level. On the x-axis the chromosomes are represented. On the y-axis the –log10 (P-value) is presented. (PNG 14 kb

Additional file 8: Figure S6. of Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

Manhattan plot for k-CN% for the within breed analysis (black and grey closed dots: Danish Holstein; green/blue closed dotes: Danish Jersey) and the meta-analysis (pink and red closed dots). The horizontal dashed line represents FDR < 0.10 significance level. On the x-axis the chromosomes are represented. On the y-axis the –log10 (P-value) is presented. (PNG 10 kb

Additional file 5: Figure S3. of Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

Manhattan plot for protein % for the within breed analysis (black and grey closed dots: Danish Holstein; green/blue closed dotes: Danish Jersey) and the meta-analysis (pink and red closed dots). The horizontal dashed line represents FDR < 0.10 significance level. On the x-axis the chromosomes are represented. On the y-axis the –log10 (P-value) is presented. (PNG 14 kb

Additional file 9: Figure S7. of Estimation of genetic parameters and detection of chromosomal regions affecting the major milk proteins and their post translational modifications in Danish Holstein and Danish Jersey cattle

Manhattan plot for β-LG% for the within breed analysis (black and grey closed dots: Danish Holstein; green/blue closed dotes: Danish Jersey) and the meta-analysis (pink and red closed dots). The horizontal dashed line represents FDR < 0.10 significance level. On the x-axis the chromosomes are represented. On the y-axis the –log10 (P-value) is presented. (PNG 11 kb