Expression analysis of secreted and cell surface genes of five transformed human cell lines and derivative xenograft tumors

BACKGROUND: Since the early stages of tumorigenesis involve adhesion, escape from immune surveillance, vascularization and angiogenesis, we devised a strategy to study the expression profiles of all publicly known and putative secreted and cell surface genes. We designed a custom oligonucleotide microarray containing probes for 3531 secreted and cell surface genes to study 5 diverse human transformed cell lines and their derivative xenograft tumors. The origins of these human cell lines were lung (A549), breast (MDA MB-231), colon (HCT-116), ovarian (SK-OV-3) and prostate (PC3) carcinomas. RESULTS: Three different analyses were performed: (1) A PCA-based linear discriminant analysis identified a 54 gene profile characteristic of all tumors, (2) Application of MANOVA (Pcorr < .05) to tumor data revealed a larger set of 149 differentially expressed genes. (3) After MANOVA was performed on data from individual tumors, a comparison of differential genes amongst all tumor types revealed 12 common differential genes. Seven of the 12 genes were identified by all three analytical methods. These included late angiogenic, morphogenic and extracellular matrix genes such as ANGPTL4, COL1A1, GP2, GPR57, LAMB3, PCDHB9 and PTGER3. The differential expression of ANGPTL4 and COL1A1 and other genes was confirmed by quantitative PCR. CONCLUSION: Overall, a comparison of the three analyses revealed an expression pattern indicative of late angiogenic processes. These results show that a xenograft model using multiple cell lines of diverse tissue origin can identify common tumorigenic cell surface or secreted molecules that may be important biomarker and therapeutic discoveries

Looking to peripheral river islands in Brazil to develop an urban island water metabolism perspective.

Across Brazil, including the water rich Amazon region, access to safe drinking water remains a challenge and rainwater harvesting has gained credibility as a technological solution. Complementing a more techno-centric approach, this practice paper analyses initial findings from an 'immersion' that was undertaken in August 2017 on Paquetá and surrounding islands located on the periphery of Belém (Schiffer and Swan, 2018), through the proposed urban island water metabolism framework. As such, the research draws on the 'urban metabolism' concept which can be described as socio-technical, socio-economic, socio-political and socio-ecological flows including water resources, people and information in, out and within the urban environment (Currie and Musango, 2016; Kennedy, Cuddihy and Engel-Yan, 2007). Here this has been adapted to 'urban island water metabolisms'. The research highlights the value of more holistic and situated understanding of water systems in urban island contexts including: the role of intra-island networks that operate beyond municipal borders; accessibility in the contexts of ever changing water levels; and seasonal dimensions. The paper recommends longer-term and comparative research to further the understanding of the specific needs and challenges for water management in these peripheral contexts and to strengthen the urban island water metabolism concept

Expansion of Bovine Chondrocytes on Microcarriers Enhances Redifferentiation

Functional cartilage implants for orthopedic surgery or in vitro tissue evaluation can be created from expanded chondrocytes and biodegradable scaffolds. Expansion of chondrocytes in two-dimensional culture systems results in their dedifferentiation. The hallmark of this process is the switch of collagen synthesis from type II to type I. The aim of this study was to evaluate the postexpansion chondrogenic potential of microcarrier-expanded bovine articular chondrocytes in pellet cultures. A selection of microcarriers was screened for initial attachment of chondrocytes. On the basis of those results and additional selection criteria related to clinical application, Cytodex-1 microcarriers were selected for further investigation. Comparable doubling times were obtained in T-flask and microcarrier cultures. During propagation on Cytodex-1 microcarriers, cells acquired a spherical-like morphology and the presence of collagen type II was detected. Both observations are indicative of a differentiated chondrocyte. Pellet cultures of microcarrier-expanded cells showed cartilage-like morphology and staining for proteoglycans and collagen type II after 14 days. In contrast, pellets of T-flask-expanded cells had a fibrous appearance and showed abundant staining only for collagen type I. Therefore, culture of chondrocytes on microcarriers may offer useful and cost-effective cell expansion opportunities in the field of cartilage tissue engineering