Filling the void in confined polymer nematics: phase transitions in a minimal model of dsDNA packing

Inspired to understand the complex spectrum of space-filling organizations the dsDNA genome within the capsid of bacterial viruses, we study a minimal, coarse-grained model of single chains densely-packed into a finite spherical volume. We build the three basic elements of the model--i) the absence of chain ends ii) the tendency of parallel-strand alignment and iii) a preference of uniform areal density of chain segments--into a polymer nematic theory for confined chains. Given the geometric constraints of the problem, we show that axially symmetric packings fall into one of three topologies: the coaxial spool; the simple solenoid; and the twisted-solenoid. Among these, only the twisted-solenoid fills the volume without the presence of line-like disclinations, or voids, and are therefore generically preferred in the incompressible limit. An analysis of the thermodynamics behavior of this simple model reveals a rich behavior, a generic sequence of phases from the empty state for small container sizes, to the coaxial spool configuration at intermediate sizes, ultimately giving way, via a second-order, symmetry-breaking transition, to the twisted-solenoid structure above a critical sphere size.Comment: 7 pages; 3 figure

Frustrated Polyelectrolyte Bundles and T=0 Josephson-Junction Arrays

We establish a one-to-one mapping between a model for hexagonal polyelectrolyte bundles and a model for two-dimensional, frustrated Josephson-junction arrays. We find that the T=0 insulator-to-superconductor transition of the {\it quantum} system corresponds to a continuous liquid-to-solid transition of the condensed charge in the finite temperature {\it classical} system. We find that the role of the vector potential in the quantum system is played by elastic strain in the classical system. Exploiting this correspondence we show that the transition is accompanied by a spontaneous breaking of chiral symmetry and that at the transition the polyelectrolyte bundle adopts a universal response to shear.Comment: 4 pages, 2 figures, 1 table minor changes to text, reference adde