9 research outputs found
Oxygen reduction and proton translocation by cytochrome c oxidase
Energy conversion by living organisms is central dogma of bioenergetics. The effectiveness of the energy extraction by aerobic organisms is much greater than by anaerobic ones. In aerobic organisms the final stage of energy conversion occurs in respiratory chain that is located in the inner membrane of mitochondria or cell membrane of some aerobic bacteria. The terminal complex of the respiratory chain is cytochrome c oxidase (CcO) - the subject of this study. The primary function of CcO is to reduce oxygen to water. For this, CcO accepts electrons from a small soluble enzyme cytochrome c from one side of the membrane and protons from another side. Moreover, CcO translocates protons across the membrane. Both oxygen reduction and proton translocation contributes to generation of transmembrane electrochemical gradient that is used for ATP synthesis and different types of work in the cell.
Although the structure of CcO is defined with a relatively high atomic resolution (1.8 Ă
), its function can hardly be elucidated from the structure. The electron transfer route within CcO and its steps are very well defined. Meanwhile, the proton transfer roots were predicted from the site-specific mutagenesis and later proved by X-ray crystallography, however, the more strong proof of the players of the proton translocation machine is still required.
In this work we developed new methods to study CcO function based on FTIR (Fourier Transform Infrared) spectroscopy. Mainly with use of these methods we answered several questions that were controversial for many years: [i] the donor of H+ for dioxygen bond splitting was identified and [ii] the protolytic transitions of Glu-278 one of the key amino acid in proton translocation mechanism was shown for the first time.Energian muuntaminen eliöissÀ on bioenergetiikan keskeisin dogmi. Energian otto on tehokkainta aerobisilla eliöillÀ verrattuna anaerobisiin eliöihin. Energian muuntamisen loppuvaihe tapahtuu aerobisten eliöiden mitokondrioiden sisÀkalvolla hengitysketjussa tai anaerobisten bakteereiden solukalvolla. Hengitysketjun pÀÀtekompleksi on sytokromi c oksidaasi (CcO) entsyymi tÀmÀn tutkimuksen kohde. CcO toimii ensisijaisesti pelkistÀmÀllÀ happea vedeksi. TÀmÀ tapahtuu kun CcO vastaanottaa kalvon toiselta puolelta elektroneja pieneltÀ ja liukoiselta sytokromi c entsyymiltÀ sekÀ protoneja toiselta puolelta. TÀmÀn lisÀksi CcO siirtÀÀ protoneja kalvon toiselle puolelle. SekÀ hapen pelkistyminen ettÀ protonien siirtyminen vaikuttavat sÀhkökemiallisen kalvojÀnnitteen syntymiseen jota solu kÀyttÀÀ ATP valmistuksessa ja erityyppisissÀ solun toiminnoissa.
Vaikka CcO entsyymin rakenne tunnetaan aina 1,8 Ă
tarkkuuteen saakka, sen toimintaa ei tuskin pelkÀn rakenteen perusteella voi pÀÀtellÀ. CcO entsyymin sisÀinen elektronin siirtoketju vÀlivaiheineen tunnetaan kuitenkin hyvin. Toisaalta protonin siirtymisen perusteita entsyymissÀ on ennustettu kohdennetun mutageneesin avulla ja myöhemmin todistettu röntgensÀde kristallografialla. TÀstÀ huolimatta vankempia todisteita protonin siirtokoneiston yksittÀisistÀ tekijöistÀ edelleen tarvitaan.
TÀssÀ työssÀ kehitimme uusia FTIR spektroskopiaan perustuvia menetelmiÀ CcO:n toiminnan selvittÀmiseksi. NÀiden uusien menetelmien avulla pystyimme vastaamaan vuosia kiistanalaisina olleisiin kysymyksiin: [i] hapen kaksoissidoksen H+ donori on nyt tunnistettu sekÀ [ii] Glu-278, joka on protonin siirtomekanismin tÀrkeimpiÀ aminohappoja, proteolyyttiset siirtymÀt on nyt ensimmÀistÀ kertaa osoitettu
Comparison Between O and OH Intermediates of Cytochrome c Oxidase Studied by FTIR Spectroscopy
Cytochrome c oxidase is terminal enzyme in the respiratory chain of mitochondria and many aerobic bacteria. It catalyzes reduction of oxygen to water. During its catalysis, CcO proceeds through several quite stable intermediates (R, A, PR/M, O/OH, E/EH). This work is concentrated on the elucidation of the differences between structures of oxidized intermediates O and OH in different CcO variants and at different pH values. Oxidized intermediates of wild type and mutated CcO from Paracoccus denitrificans were studied by means of static and time-resolved Fourier-transform infrared spectroscopy in acidic and alkaline conditions in the infrared region 1800â1000 cmâ1. No reasonable differences were found between all variants in these conditions, and in this spectral region. This finding means that the binuclear center of oxygen reduction keeps a very similar structure and holds the same ligands in the studied conditions. The further investigation in search of differences should be performed in the 4000â2000 cmâ1 IR region where water ligands absorb.Peer reviewe
Probing the Proton-Loading Site of Cytochrome C Oxidase Using Time-Resolved Fourier Transform Infrared Spectroscopy
Crystal structure analyses at atomic resolution and FTIR spectroscopic studies of cytochrome c oxidase have yet not revealed protonation or deprotonation of key sites of proton transfer in a time-resolved mode. Here, a sensitive technique to detect protolytic transitions is employed. In this work, probing a proton-loading site of cytochrome c oxidase from Paracoccus denitrificans with time-resolved Fourier transform infrared spectroscopy is presented for the first time. For this purpose, variants with single-site mutations of N131V, D124N, and E278Q, the key residues in the D-channel, were studied. The reaction of mutated CcO enzymes with oxygen was monitored and analyzed. Seven infrared bands in the âfastâ kinetic spectra were found based on the following three requirements: (1) they are present in the âfastâ phases of N131V and D124N mutants, (2) they have reciprocal counterparts in the âslowâ kinetic spectra in these mutants, and (3) they are absent in âfastâ kinetic spectra of the E278Q mutant. Moreover, the double-difference spectra between the first two mutants and E278Q revealed more IR bands that may belong to the proton-loading site protolytic transitions. From these results, it is assumed that several polar residues and/or water molecule cluster(s) share a proton as a proton-loading site. This site can be propionate itself (holding only a fraction of H+), His403, and/or water cluster(s)
Probing the Proton-Loading Site of Cytochrome C Oxidase Using Time-Resolved Fourier Transform Infrared Spectroscopy
Crystal structure analyses at atomic resolution and FTIR spectroscopic studies of cytochrome c oxidase have yet not revealed protonation or deprotonation of key sites of proton transfer in a time-resolved mode. Here, a sensitive technique to detect protolytic transitions is employed. In this work, probing a proton-loading site of cytochrome c oxidase from Paracoccus denitrificans with time-resolved Fourier transform infrared spectroscopy is presented for the first time. For this purpose, variants with single-site mutations of N131V, D124N, and E278Q, the key residues in the D-channel, were studied. The reaction of mutated CcO enzymes with oxygen was monitored and analyzed. Seven infrared bands in the âfastâ kinetic spectra were found based on the following three requirements: (1) they are present in the âfastâ phases of N131V and D124N mutants, (2) they have reciprocal counterparts in the âslowâ kinetic spectra in these mutants, and (3) they are absent in âfastâ kinetic spectra of the E278Q mutant. Moreover, the double-difference spectra between the first two mutants and E278Q revealed more IR bands that may belong to the proton-loading site protolytic transitions. From these results, it is assumed that several polar residues and/or water molecule cluster(s) share a proton as a proton-loading site. This site can be propionate itself (holding only a fraction of H+), His403, and/or water cluster(s)