Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content

Following the domestication of maize over the past ∼10,000 years, breeders have exploited the extensive genetic diversity of this species to mold its phenotype to meet human needs. The extent of structural variation, including copy number variation (CNV) and presence/absence variation (PAV), which are thought to contribute to the extraordinary phenotypic diversity and plasticity of this important crop, have not been elucidated. Whole-genome, array-based, comparative genomic hybridization (CGH) revealed a level of structural diversity between the inbred lines B73 and Mo17 that is unprecedented among higher eukaryotes. A detailed analysis of altered segments of DNA conservatively estimates that there are several hundred CNV sequences among the two genotypes, as well as several thousand PAV sequences that are present in B73 but not Mo17. Haplotype-specific PAVs contain hundreds of single-copy, expressed genes that may contribute to heterosis and to the extraordinary phenotypic diversity of this important crop

Transcriptional Activity of the Telomeric Retrotransposon HeT-A in Drosophila melanogaster Is Stimulated as a Consequence of Subterminal Deficiencies at Homologous and Nonhomologous Telomeres▿

Drosophila melanogaster telomeres have two DNA domains: a terminal array of retrotransposons and a subterminal repetitive telomere-associated sequence (TAS), a source of telomere position effect (TPE). We reported previously that deletion of the 2L TAS array leads to dominant suppression of TPE by stimulating in trans expression of a telomeric transgene. Here, we compared the transcript activities of a w transgene inserted between the retrotransposon and TAS arrays at the 2L telomere in genotypes with different lengths of the 2L TAS. In contrast to individuals bearing a wild-type 2L homologue, flies with a TAS deficiency showed a significant increase in the level of telomeric w transcript during development, especially in pupae. Moreover, we identified a read-through w transcript initiated from a retrotransposon promoter in the terminal array. Read-through transcript levels also significantly increased with the presence of a 2L TAS deficiency in trans, indicating a stimulating force of the TAS deficiency on retrotransposon promoter activity. The read-through transcript contributes to total w transcript, although most w transcript originates at the w promoter. While silencing of transgenes in nonhomologous telomeres is suppressed by 2L TAS deficiencies, suggesting a global effect, the overall level of HeT-A transcripts is not increased under similar conditions

Miniature ion thruster ring-cusp discharge performance and behavior

Miniature ion thrusters are an attractive option for a wide range of space missions due to their low power levels and high specific impulse. Thrusters using ring-cusp plasma discharges promise the highest performance, but are still limited by the challenges of efficiently maintaining a plasma discharge at such small scales (typically 1-3 cm diameter). This effort significantly advances the understanding of miniature-scale plasma discharges by comparing the performance and xenon plasma confinement behavior for 3-ring, 4-ring, and 5-ring cusp by using the 3 cm Miniature Xenon Ion thruster as a modifiable platform. By measuring and comparing the plasma and electron energy distribution maps throughout the discharge, we find that miniature ring-cusp plasma behavior is dominated by the high magnetic fields from the cusps; this can lead to high loss rates of high-energy primary electrons to the anode walls. However, the primary electron confinement was shown to considerably improve by imposing an axial magnetic field or by using cathode terminating cusps, which led to increases in the discharge efficiency of up to 50%. Even though these design modifications still present some challenges, they show promise to bypassing what were previously seen as inherent limitations to ring-cusp discharge efficiency at miniature scales