Understanding the ideal glass transition: Lessons from an equilibrium study of hard disks in a channel

We use an exact transfer-matrix approach to compute the equilibrium properties of a system of hard disks of diameter $\sigma$ confined to a two-dimensional channel of width $1.95\,\sigma$ at constant longitudinal applied force. At this channel width, which is sufficient for next-nearest-neighbor disks to interact, the system is known to have a great many jammed states. Our calculations show that the longitudinal force (pressure) extrapolates to infinity at a well-defined packing fraction $\phi_K$ that is less than the maximum possible $\phi_{\rm max}$, the latter corresponding to a buckled crystal. In this quasi-one-dimensional problem there is no question of there being any \emph{real} divergence of the pressure at $\phi_K$. We give arguments that this avoided phase transition is a structural feature -- the remnant in our narrow channel system of the hexatic to crystal transition -- but that it has the phenomenology of the (avoided) ideal glass transition. We identify a length scale $\tilde{\xi}_3$ as our equivalent of the penetration length for amorphous order: In the channel system, it reaches a maximum value of around $15\,\sigma$ at $\phi_K$, which is larger than the penetration lengths that have been reported for three dimensional systems. It is argued that the $\alpha$-relaxation time would appear on extrapolation to diverge in a Vogel-Fulcher manner as the packing fraction approaches $\phi_K$.Comment: 17 pages, 16 figure

Absence of hyperuniformity in amorphous hard-sphere packings of nonvanishing complexity

We relate the structure factor $S(\mathbf{k} \to \mathbf{0})$ in a system of jammed hard spheres of number density $\rho$ to its complexity per particle $\Sigma(\rho)$ by the formula $S(\mathbf{k} \to \mathbf{0})=-1/ [\rho^2\Sigma''(\rho)+2\rho\Sigma'(\rho)]$. We have verified this formula for the case of jammed disks in a narrow channel, for which it is possible to find $\Sigma(\rho)$ and $S(\mathbf{k})$ analytically. Hyperuniformity, which is the vanishing of $S(\mathbf{k} \to \mathbf{0})$, will therefore not occur if the complexity is nonzero. An example is given of a jammed state of hard disks in a narrow channel which is hyperuniform when generated by dynamical rules that produce a non-extensive complexity.Comment: 5 pages, 3 figure

The validity of capillary blood sampling in the determination of human growth hormone concentration during exercise in men

This is an open access article - Copyright © 2004 BMJ Publishing Group LtdBACKGROUND: Studies measuring human growth hormone (hGH) in blood during exercise have mainly used venous sampling. The invasive nature of this procedure makes evaluation of hGH impossible in various exercise environments. OBJECTIVE: To determine whether capillary sampling could offer an alternative sampling method. METHODS: Capillary and venous blood samples were collected for determination of hGH at the end of each exercise stage during an incremental exercise test in 16 male club level competitive cyclists (mean (SD) age 30.8 (8.0) years, body mass 72.2 (7.1) kg, body fat 12.9 (3.5)%, peak oxygen consumption 4.18 (0.46) l⋅min−1). Linear regression, from a plot of venous v capillary blood hGH concentration, showed a correlation coefficient of r = 0.986 (p<0.001). When geometric means and log transformations were used, a coefficient of variation of 14.2% was demonstrated between venous and capillary flow for hGH concentration. The mean ratio limits of agreement were 0.62 (1.72)—that is, 95% of the ratios were contained between 0.36 and 1.07, with a mean of 0.62. CONCLUSIONS: Capillary blood sampling is an acceptable alternative to venous sampling for determining hGH concentration during rest and exercise. Sample sites should not be used interchangeably: one site should be chosen and its use standardised

Transition state theory and the dynamics of hard disks

The dynamics of two and five disk systems confined in a square has been studied using molecular dynamics simulations and compared with the predictions of transition state theory. We determine the partition functions Z and Z^\ddagger of transition state theory using a procedure first used by Salsburg and Wood for the pressure. Our simulations show this procedure and transition state theory are in excellent agreement with the simulations. A generalization of the transition state theory to the case of a large number of disks N is made and shown to be in full agreement with simulations of disks moving in a narrow channel. The same procedure for hard spheres in three dimensions leads to the Vogel-Fulcher-Tammann formula for their alpha relaxation time.Comment: 1 new author, new simulations and figures, less speculation. Now 6 pages, 6 figures, 1 animation. Animation may be viewed at http://www.theory.physics.manchester.ac.uk/~godfrey/supplement/activated_dynamics2.htm

Lentiviral manipulation of gene expression in human adult and embryonic stem cells

Human stem cells could revolutionize the field of medicine by providing a diverse range of cell types for tissue replacement therapies and drug discovery. To achieve this goal, genetic tools need to be optimized and developed for controlling and manipulating stem cells ex vivo. Here we describe a lentiviral delivery system capable of high infection rates in human mesenchymal and embryonic stem cells. The lentiviral backbone was modified to express mono- and bi-cistronic transgenes and was also used to deliver short hairpin ribonucleic acid for specific silencing of gene expression in human stem cells. We show that lentiviral transduction can be used to alter gene expression without altering the genes' ability to differentiate in vitro. These vectors will enable rapid analysis of gene function in stem cells and permit the generation of knock-in / knock-out models of human disease in the rapidly developing field of gene therapy

Two-stage clustering in genotype-by-environment analyses with missing data

Cluster analysis has been commonly used in genotype-by-environment (G x E) analyses, but current methods are inadequate when the data matrix is incomplete. This paper proposes a new method, referred to as two-stage clustering, which relies on a partitioning of squared Euclidean distance into two independent components, the G x E interaction and the genotype main effect. These components are used in the first and second stages of clustering respectively. Two-stage clustering forms the basis for imputing missing values in the G x E matrix so that a more complete data array is available for other GxE analyses. Imputation for a given genotype uses information from genotypes with similar interaction profiles. This imputation method is shown to improve on an existing nearest cluster method that confounds the G x E interaction and the genotype main effect

Properties of the Strange Axial Mesons in the Relativized Quark Model

We studied properties of the strange axial mesons in the relativized quark model. We calculated the $K_1$ decay constant in the quark model and showed how it can be used to extract the $K_1 (^3P_1) - K_1 (^1P_1)$ mixing angle ($\theta_K$) from the weak decay $\tau \to K_1 \nu_\tau$. The ratio $BR(\tau \to \nu_\tau K_1 (1270))/BR(\tau\to \nu_\tau K_1(1400))$ is the most sensitive measurement and also the most reliable since the largest of the theoretical uncertainties factor out. However the current bounds extracted from the TPC/Two-Gamma collaboration measurements are rather weak: we typically obtain $-30^o \lesssim \theta_K \lesssim 50^o$ at 68\% C.L. We also calculated the strong OZI-allowed decays in the pseudoscalar emission model and the flux-tube breaking model and extracted a $^3P_1 - ^1P_1$ mixing angle of $\theta_K \simeq 45^o$. Our analysis also indicates that the heavy quark limit does not give a good description of the strange mesons.Comment: Revised version to be published in Phys. Rev. D. Minor changes. Latex file uses revtex version 3 and epsfig, 4 postcript figures are attached. The full postcript version with embedded figures is available at ftp://ftp.physics.carleton.ca/pub/theory/godfrey/ocipc9512.ps.