North Brazil Current Rings Experiment : mooring S1 data report, November 1998 - June 2000

Nineteen months of temperature and salinity data were recovered from North Brazil Current (NBC) Rings Experiment Mooring S1. The mooring, located east of Barbados at 13º 00’N, 57º 53’W between November 1998 and June 2000, consisted of a vertical array of five temperature/conductivity recorders, five temperature recorders, one 150 kHz acoustic Doppler current profiler (ADCP), and one 260 Hz RAFOS sound source. This instrumentation was distributed over a depth interval (500-1100m) coincident with the low-salinity core of Antarctic Intermediate Water. Due to low concentration of scattering particles at 1000 m, the ADCP failed to return useful velocity data. Heading, pitch, and roll data were successfully recorded, however, and provide coarse measurement of current intensity. Four anomalously low temperature, low salinity, and (inferred) high-velocity events appear toward the end of the record. The temperature and salinity fluctuations observed during these events are most likely due to a combination of vertical instrument excursions due to current-induced mooring tilt and advection of anomalous NBC ring-core water past the mooring site. Anomalous conditions persist for a period of 2-3 weeks and appear, based on simultaneous surface drifter trajectories and satellite ocean color observations, to be associated with the passage of NBC Rings near Barbados.Funding was provided by the National Science Foundation under Grant No. OCE-9729765

Bonded Cumomer Analysis of Human Melanoma Metabolism Monitored by 13C NMR Spectroscopy of Perfused Tumor Cells.

A network model for the determination of tumor metabolic fluxes from (13)C NMR kinetic isotopomer data has been developed and validated with perfused human DB-1 melanoma cells carrying the BRAF V600E mutation, which promotes oxidative metabolism. The model generated in the bonded cumomer formalism describes key pathways of tumor intermediary metabolism and yields dynamic curves for positional isotopic enrichment and spin-spin multiplets. Cells attached to microcarrier beads were perfused with 26 mm [1,6-(13)C2]glucose under normoxic conditions at 37 °C and monitored by (13)C NMR spectroscopy. Excellent agreement between model-predicted and experimentally measured values of the rates of oxygen and glucose consumption, lactate production, and glutamate pool size validated the model. ATP production by glycolytic and oxidative metabolism were compared under hyperglycemic normoxic conditions; 51% of the energy came from oxidative phosphorylation and 49% came from glycolysis. Even though the rate of glutamine uptake was ∼50% of the tricarboxylic acid cycle flux, the rate of ATP production from glutamine was essentially zero (no glutaminolysis). De novo fatty acid production was ∼6% of the tricarboxylic acid cycle flux. The oxidative pentose phosphate pathway flux was 3.6% of glycolysis, and three non-oxidative pentose phosphate pathway exchange fluxes were calculated. Mass spectrometry was then used to compare fluxes through various pathways under hyperglycemic (26 mm) and euglycemic (5 mm) conditions. Under euglycemic conditions glutamine uptake doubled, but ATP production from glutamine did not significantly change. A new parameter measuring the Warburg effect (the ratio of lactate production flux to pyruvate influx through the mitochondrial pyruvate carrier) was calculated to be 21, close to upper limit of oxidative metabolism

North Brazil Current Rings Experiment : surface drifter data report, November 1998-June 2000

This data report summarzes 45 surface drifter trajectories collected between November 1998 and June 2000 as part of the North Brazil Current (NBC) Rings Experiment. NBC rings have been proposed as one of several important mechanisms for the transport of South Atlantic upper-ocean water across the equatorial-tropical gyre boundary and into the North Atlantic subtropical gyre. Such transport is required to complete the meridional overturning cell in the Atlantic forced by the high-latitude production and southward export of North Atlantic Deep Water. The goal of this program is to obtain, for the first time, comprehensive observations of the NBC retroflection, the NBC ring formation process, and the physical structure and properties of NBC rings as they translate northwestward along the low-latitude western boundary. A total of 45 drifters were deployed. Twenty-four of these looped anticyclonically within the five rings identified during this experiment. Seven of the looping ring drifters entered the Caribbean, while the rest moved northward along the eastern flank of the Lesser Antiles.Funding was provided by the National Science Foundation under Grant No. OCE-9729765

A moving target : matching graduate education with available careers for ocean scientists

Author Posting. © The Oceanography Society, 2016. This article is posted here by permission of The Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 29, no. 1 (2016): 22–30, doi:10.5670/oceanog.2016.05.The objective of this paper is to look at past assessments and available data to examine the match (or mismatch) between university curricula and programs available to graduate students in the ocean sciences and the career possibilities available to those students. We conclude there is a need for fundamental change in how we educate graduate students in the ocean sciences. The change should accommodate the interests of students as well as the needs of a changing society; the change should not be constrained by the traditions or resource challenges of the graduate institutions themselves. The limited data we have been able to obtain from schools and employers are consistent with this view: desirable careers for ocean scientists are moving rapidly toward interdisciplinary, collaborative, societally relevant activities, away from traditional academic-research/professorial jobs, but the training available to the students is not keeping pace. We offer some suggestions to mitigate the mismatch. Most importantly, although anecdotes and “gut feelings” abound, the quantitative data backing our conclusions and suggestions are very sparse and barely compelling; we urge better data collection to support curricular revision, perhaps with the involvement of professional societies

Deep-Sea Debris in the Central and Western Pacific Ocean

Marine debris is a growing problem in the world’s deep ocean. The naturally slow biological and chemical processes operating at depth, coupled with the types of materials that are used commercially, suggest that debris is likely to persist in the deep ocean for long periods of time, ranging from hundreds to thousands of years. However, the realized scale of marine debris accumulation in the deep ocean is unknown due to the logistical, technological, and financial constraints related to deep-ocean exploration. Coordinated deep-water exploration from 2015 to 2017 enabled new insights into the status of deep-sea marine debris throughout the central and western Pacific Basin via ROV expeditions conducted onboard NOAA Ship Okeanos Explorer and RV Falkor. These expeditions included sites in United States protected areas and monuments, other Exclusive Economic Zones, international protected areas, and areas beyond national jurisdiction. Metal, glass, plastic, rubber, cloth, fishing gear, and other marine debris were encountered during 17.5% of the 188 dives from 150 to 6,000 m depth. Correlations were observed between deep-sea debris densities and depth, geological features, and distance from human-settled land. The highest densities occurred off American Samoa and the main Hawaiian Islands. Debris, mostly consisting of fishing gear and plastic, were also observed in most of the large-scale marine protected areas, adding to the growing body of evidence that even deep, remote areas of the ocean are not immune from human impacts. Interactions with and impacts on biological communities were noted, though further study is required to understand the full extent of these impacts. We also discuss potential sources and long-term implications of this debris.This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms

North Brazil Current Rings Experiment : RAFOS float data report : November 1998 – June 2000

Twenty-one RAFOS floats were tracked at depths of 200-1000 meters in and around several North Brazil Current Rings between November 1998 and June 2000. This was part of an experiment to study the role of these current rings in transporting upper level South Atlantic water across the equatorial-tropical gyre boundary into the North Atlantic subtropical gyre. The float trajectories in combination with surface drifters and satellite imagery reveal the sometimes complex life histories of several rings and their fate as they collide with the Lesser Antilles Islands. This report describes the float trajectories, the velocity, temperature, and depth time series, and a preliminary analysis of the float data.Funding was provided by the National Science Foundation under Grant No. OCE-9729765 and OCE-0136477

(31) P and (1) H MRS of DB-1 melanoma xenografts: lonidamine selectively decreases tumor intracellular pH and energy status and sensitizes tumors to melphalan.

In vivo (31) P MRS demonstrates that human melanoma xenografts in immunosuppressed mice treated with lonidamine (LND, 100 mg/kg intraperitoneally) exhibit a decrease in intracellular pH (pH(i) ) from 6.90 ± 0.05 to 6.33 ± 0.10 (p \u3c 0.001), a slight decrease in extracellular pH (pH(e) ) from 7.00 ± 0.04 to 6.80 ± 0.07 (p \u3e 0.05) and a monotonic decline in bioenergetics (nucleoside triphosphate/inorganic phosphate) of 66.8 ± 5.7% (p \u3c 0.001) relative to the baseline level. Both bioenergetics and pH(i) decreases were sustained for at least 3 h following LND treatment. Liver exhibited a transient intracellular acidification by 0.2 ± 0.1 pH units (p \u3e 0.05) at 20 min post-LND, with no significant change in pH(e) and a small transient decrease in bioenergetics (32.9 ± 10.6%, p \u3e 0.05) at 40 min post-LND. No changes in pH(i) or adenosine triphosphate/inorganic phosphate were detected in the brain (pH(i) , bioenergetics; p \u3e 0.1) or skeletal muscle (pH(i) , pH(e) , bioenergetics; p \u3e 0.1) for at least 120 min post-LND. Steady-state tumor lactate monitored by (1) H MRS with a selective multiquantum pulse sequence with Hadamard localization increased approximately three-fold (p = 0.009). Treatment with LND increased the systemic melanoma response to melphalan (LPAM; 7.5 mg/kg intravenously), producing a growth delay of 19.9 ± 2.0 days (tumor doubling time, 6.15 ± 0.31 days; log(10) cell kill, 0.975 ± 0.110; cell kill, 89.4 ± 2.2%) compared with LND alone of 1.1 ± 0.1 days and LPAM alone of 4.0 ± 0.0 days. The study demonstrates that the effects of LND on tumor pH(i) and bioenergetics may sensitize melanoma to pH-dependent therapeutics, such as chemotherapy with alkylating agents or hyperthermia

(13)C MRS and LC-MS Flux Analysis of Tumor Intermediary Metabolism.

We present the first validated metabolic network model for analysis of flux through key pathways of tumor intermediary metabolism, including glycolysis, the oxidative and non-oxidative arms of the pentose pyrophosphate shunt, the TCA cycle as well as its anaplerotic pathways, pyruvate-malate shuttling, glutaminolysis, and fatty acid biosynthesis and oxidation. The model that is called Bonded Cumomer Analysis for application to (13)C magnetic resonance spectroscopy ((13)C MRS) data and Fragmented Cumomer Analysis for mass spectrometric data is a refined and efficient form of isotopomer analysis that can readily be expanded to incorporate glycogen, phospholipid, and other pathways thereby encompassing all the key pathways of tumor intermediary metabolism. Validation was achieved by demonstrating agreement of experimental measurements of the metabolic rates of oxygen consumption, glucose consumption, lactate production, and glutamate pool size with independent measurements of these parameters in cultured human DB-1 melanoma cells. These cumomer models have been applied to studies of DB-1 melanoma and DLCL2 human diffuse large B-cell lymphoma cells in culture and as xenografts in nude mice at 9.4 T. The latter studies demonstrate the potential translation of these methods to in situ studies of human tumor metabolism by MRS with stable (13)C isotopically labeled substrates on instruments operating at high magnetic fields (≥7 T). The melanoma studies indicate that this tumor line obtains 51% of its ATP by mitochondrial metabolism and 49% by glycolytic metabolism under both euglycemic (5 mM glucose) and hyperglycemic conditions (26 mM glucose). While a high level of glutamine uptake is detected corresponding to ~50% of TCA cycle flux under hyperglycemic conditions, and ~100% of TCA cycle flux under euglycemic conditions, glutaminolysis flux and its contributions to ATP synthesis were very small. Studies of human lymphoma cells demonstrated that inhibition of mammalian target of rapamycin (mTOR) signaling produced changes in flux through the glycolytic, pentose shunt, and TCA cycle pathways that were evident within 8 h of treatment and increased at 24 and 48 h. Lactate was demonstrated to be a suitable biomarker of mTOR inhibition that could readily be monitored by (1)H MRS and perhaps also by FDG-PET and hyperpolarized (13)C MRS methods

A Moving Target: Matching Graduate Education with Available Careers for Ocean Scientists

The objective of this paper is to look at past assessments and available data to examine the match (or mismatch) between university curricula and programs available to graduate students in the ocean sciences and the career possibilities available to those students. We conclude there is a need for fundamental change in how we educate graduate students in the ocean sciences. The change should accommodate the interests of students as well as the needs of a changing society; the change should not be constrained by the traditions or resource challenges of the graduate institutions themselves. The limited data we have been able to obtain from schools and employers are consistent with this view: desirable careers for ocean scientists are moving rapidly toward interdisciplinary, collaborative, societally relevant activities, away from traditional academic-research/professorial jobs, but the training available to the students is not keeping pace. We offer some suggestions to mitigate the mismatch. Most importantly, although anecdotes and “gut feelings” abound, the quantitative data backing our conclusions and suggestions are very sparse and barely compelling; we urge better data collection to support curricular revision, perhaps with the involvement of professional societies

Proton and sodium MRI assessment of emerging tumor chemotherapeutic resistance

The ultimate goal of any cancer therapy is to target the elimination of neoplastic cells. Although newer therapeutic strategies are in constant development, therapeutic assessment has been hampered by the inability to assess, rapidly and quantitatively, efficacy in vivo . Diffusion imaging and, more recently, sodium MRI have demonstrated their distinct abilities to detect therapy-induced alterations in tumor cellularity, which has been demonstrated to be indicative of therapeutic efficacy. More importantly, both imaging modalities detect tumor response much earlier than traditional methodologies that rely on macroscopic volumetric changes. In this study, the correlation between tumor sodium and diffusion was further tested to demonstrate the sensitivity of sodium imaging to gauge tumor response to therapy by using a 9L rat gliosarcoma treated with varying doses of BCNU [1,3-bis(2-chloroethyl)-1-nitrosourea]. This orthotopic model has been demonstrated to display variability in response to BCNU therapy where initial insult has been shown to lead to drug-resistance. In brief, a single 26.6 mg/kg BCNU dose yielded dramatic responses in both diffusion and sodium MRI. However, a second equivalent BCNU dose yielded a much smaller change in diffusion and sodium, suggesting a drop in tumor sensitivity to BCNU. The MRI responses of animals treated with 13.3 mg/kg BCNU were much lower and similar responses were observed after the initial and secondary applications of BCNU. Furthermore, these results were further validated using volumetric measurements of the tumor and also ex vivo determination of tumor sensitivity to BCNU. Overall, these experiments demonstrate the sensitivity and applicability of sodium and diffusion MRI as tools for dynamic assessment of tumor response to therapy. Copyright © 2006 John Wiley & Sons, Ltd.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/55899/1/1074_ftp.pd