Genotyping of grapevine and rootstock cultivars using microsatellite markers

Sixty-six grapevine and rootstock cultivars from an Austrian germplasm collection were genotyped using the following 10 microsatellite loci: VVS1, VVS2, VVS3, VVS4 (THOMAS and SCOTT 1993), VVS29 (THOMAS, pers. comm.), VVMD5, VVMD7 (BOWERS et al. 1996), VVMD28, VVMD32 and VVMD36 (BOWERS and MEREDITH, pers, comm.). All cultivars except those which are thought to be closely related (e.g. Portugieser blau and Portugieser grun) provided unique allelic profiles. A phenogram based on pairwise similarity values revealed the separation of rootstock cultivars from the Vitis vinifera varieties. The probability for the presence of null alleles was estimated from heterozygote deficiencies and null alleles were statistically excluded at 9 of the 10 loci. In order to demonstrate the distinctive power of the microsatellite markers investigated, gene diversity (GD) values were calculated. For both grapevine and rootstock cultivars we estimated a GD range from 0.70 to 0.91, while GD values for grapevines only range from 0.52 to 0.87 and values for rootstocks from 0.29 to 0.86

Application of microsatellite markers to parentage studies in grapevine

The use of microsatellites in genetic analysis does not only allow differentiation but also identification and parentage analysis of grapevine cultivars. Many of the cultivars which are of great economic importance, like Cabernet Sauvignon, have been selected and propagated centuries ago and often lack reliable documentation about their origins. In our study, 51 grapevine cultivars were genotyped at 24 microsatellite loci and searched for possible parent-offspring combinations. Our data confirm the origin of Cabernet Sauvignon from a cross between Cabernet franc and Sauvignon blanc. Furthermore we proved the parentage of the cultivars Neuburger (Silvaner x Veltliner rot), Blauburger (Portugieser blau x Blaufränkisch), Zweigelt (Blaufränkisch x St. Laurent) and Müller-Thurgau (Rheinriesling x Chasselas de Courtillier) at 24 SSR loci

Genetic analysis of grape berries and raisins using microsatellite markers

Microsatellite markers have been used recently for the identification and pedigree analysis of grapevines with leaves and wood as sources of vine DNA. To identify grapes after harvest and their products, we applied DNA extraction protocols to grape berries and raisins. DNA was obtained from both sources, but that of raisins was highly degraded. The suitability of DNA for PCR amplification of single genetic loci was shown by amplification of 11 microsatellite markers. 18 commercially available table grape samples were genotyped, and 11 (61 %) matched the corresponding genetic profile in our reference database. Four samples were shown to be defined incorrectly and 4 samples did not match any of the generic profiles present in the database. The investigated raisins were found to be cv. Sultanina. The results demonstrate that DNA-based cultivar identification methods can be applied to harvested grapes and raisins

Molecular differentiation of commercial varieties and feral populations of oilseed rape (Brassica napus L.)

Background For assessing the risk of escape of transgenes from cultivation, the persistence of feral populations of crop plants is an important aspect. Feral populations of oilseed rape, Brassica napus, are well known, but only scarce information is available on their population dynamics, particularly in Central Europe. To investigate genetic diversity, origin and persistence of feral oilseed rape in Austria, we compared variation at nine polymorphic microsatellite loci in eight feral populations with 19 commercial varieties. Results Overall, commercial varieties and feral populations showed a similar pattern of genetic variation and a similar level of observed heterozygosity. The two groups, however, shared less than 50% of the alleles and no multilocus genotype. A significant among-group (commercial varieties versus feral populations) component of genetic variation was observed (AMOVA: FCT = 0.132). Pairwise comparisons between varieties and feral populations showed moderate to very high genetic differentiation (FST = 0.209 - 0.900). The software STRUCTURE also demonstrated a clear separation between commercial varieties and feral samples: out of 17 identified genetic clusters, only one comprised plants from both a commercial variety and feral sites. Conclusions The results suggest that feral oilseed rape is able to maintain persistent populations. The feral populations may have derived from older cultivars that were not included in our analyses or perhaps have already hybridised with related crops or wild relatives. Feral populations therefore have to be considered in ecological risk assessment and future coexistence measures as a potential hybridisation partner of transgenic oilseed rape