Using an Electronic Monitoring System to Link Offspring Provisioning and Foraging Behavior of a Wild Passerine

Although the costs of parental care are at the foundations of optimal-parental-investment theory, our understanding of the nature of the underlying costs is limited by the difficulty of measuring variation in foraging effort. We simultaneously measured parental provisioning and foraging behavior in a free-living population of Zebra Finches (Taeniopygia guttata) using an electronic monitoring system. We fitted 145 adults with a passive transponder tag and remotely recorded their visits to nest boxes and feeders continuously over a 2-month period. After validating the accuracy of this monitoring system, we studied how provisioning and foraging activities varied through time (day and breeding cycle) and influenced the benefits (food received by the offspring) and costs (interclutch interval) of parental care. The provisioning rates of wild Zebra Finches were surprisingly low, with an average of only one visit per hour throughout the day. This was significantly lower than those reported for this model species in captivity and for most other passerines in the wild. Nest visitation rate only partially explained the amount of food received by the young, with parental foraging activity, including the minimum distance covered on foraging trips, being better predictors. Parents that sustained higher foraging activity and covered more distance during the first breeding attempt took longer to renest. These results demonstrate that in some species matching foraging activity with offspring provisioning may provide a better estimate of the true investment that individuals commit to a reproductive attempt

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Adding 6 months of androgen deprivation therapy to postoperative radiotherapy for prostate cancer: a comparison of short-course versus no androgen deprivation therapy in the RADICALS-HD randomised controlled trial

Background Previous evidence indicates that adjuvant, short-course androgen deprivation therapy (ADT) improves metastasis-free survival when given with primary radiotherapy for intermediate-risk and high-risk localised prostate cancer. However, the value of ADT with postoperative radiotherapy after radical prostatectomy is unclear. Methods RADICALS-HD was an international randomised controlled trial to test the efficacy of ADT used in combination with postoperative radiotherapy for prostate cancer. Key eligibility criteria were indication for radiotherapy after radical prostatectomy for prostate cancer, prostate-specific antigen less than 5 ng/mL, absence of metastatic disease, and written consent. Participants were randomly assigned (1:1) to radiotherapy alone (no ADT) or radiotherapy with 6 months of ADT (short-course ADT), using monthly subcutaneous gonadotropin-releasing hormone analogue injections, daily oral bicalutamide monotherapy 150 mg, or monthly subcutaneous degarelix. Randomisation was done centrally through minimisation with a random element, stratified by Gleason score, positive margins, radiotherapy timing, planned radiotherapy schedule, and planned type of ADT, in a computerised system. The allocated treatment was not masked. The primary outcome measure was metastasis-free survival, defined as distant metastasis arising from prostate cancer or death from any cause. Standard survival analysis methods were used, accounting for randomisation stratification factors. The trial had 80% power with two-sided α of 5% to detect an absolute increase in 10-year metastasis-free survival from 80% to 86% (hazard ratio [HR] 0·67). Analyses followed the intention-to-treat principle. The trial is registered with the ISRCTN registry, ISRCTN40814031, and ClinicalTrials.gov, NCT00541047. Findings Between Nov 22, 2007, and June 29, 2015, 1480 patients (median age 66 years [IQR 61–69]) were randomly assigned to receive no ADT (n=737) or short-course ADT (n=743) in addition to postoperative radiotherapy at 121 centres in Canada, Denmark, Ireland, and the UK. With a median follow-up of 9·0 years (IQR 7·1–10·1), metastasis-free survival events were reported for 268 participants (142 in the no ADT group and 126 in the short-course ADT group; HR 0·886 [95% CI 0·688–1·140], p=0·35). 10-year metastasis-free survival was 79·2% (95% CI 75·4–82·5) in the no ADT group and 80·4% (76·6–83·6) in the short-course ADT group. Toxicity of grade 3 or higher was reported for 121 (17%) of 737 participants in the no ADT group and 100 (14%) of 743 in the short-course ADT group (p=0·15), with no treatment-related deaths. Interpretation Metastatic disease is uncommon following postoperative bed radiotherapy after radical prostatectomy. Adding 6 months of ADT to this radiotherapy did not improve metastasis-free survival compared with no ADT. These findings do not support the use of short-course ADT with postoperative radiotherapy in this patient population

Duration of androgen deprivation therapy with postoperative radiotherapy for prostate cancer: a comparison of long-course versus short-course androgen deprivation therapy in the RADICALS-HD randomised trial

Background Previous evidence supports androgen deprivation therapy (ADT) with primary radiotherapy as initial treatment for intermediate-risk and high-risk localised prostate cancer. However, the use and optimal duration of ADT with postoperative radiotherapy after radical prostatectomy remains uncertain. Methods RADICALS-HD was a randomised controlled trial of ADT duration within the RADICALS protocol. Here, we report on the comparison of short-course versus long-course ADT. Key eligibility criteria were indication for radiotherapy after previous radical prostatectomy for prostate cancer, prostate-specific antigen less than 5 ng/mL, absence of metastatic disease, and written consent. Participants were randomly assigned (1:1) to add 6 months of ADT (short-course ADT) or 24 months of ADT (long-course ADT) to radiotherapy, using subcutaneous gonadotrophin-releasing hormone analogue (monthly in the short-course ADT group and 3-monthly in the long-course ADT group), daily oral bicalutamide monotherapy 150 mg, or monthly subcutaneous degarelix. Randomisation was done centrally through minimisation with a random element, stratified by Gleason score, positive margins, radiotherapy timing, planned radiotherapy schedule, and planned type of ADT, in a computerised system. The allocated treatment was not masked. The primary outcome measure was metastasis-free survival, defined as metastasis arising from prostate cancer or death from any cause. The comparison had more than 80% power with two-sided α of 5% to detect an absolute increase in 10-year metastasis-free survival from 75% to 81% (hazard ratio [HR] 0·72). Standard time-to-event analyses were used. Analyses followed intention-to-treat principle. The trial is registered with the ISRCTN registry, ISRCTN40814031, and ClinicalTrials.gov , NCT00541047 . Findings Between Jan 30, 2008, and July 7, 2015, 1523 patients (median age 65 years, IQR 60–69) were randomly assigned to receive short-course ADT (n=761) or long-course ADT (n=762) in addition to postoperative radiotherapy at 138 centres in Canada, Denmark, Ireland, and the UK. With a median follow-up of 8·9 years (7·0–10·0), 313 metastasis-free survival events were reported overall (174 in the short-course ADT group and 139 in the long-course ADT group; HR 0·773 [95% CI 0·612–0·975]; p=0·029). 10-year metastasis-free survival was 71·9% (95% CI 67·6–75·7) in the short-course ADT group and 78·1% (74·2–81·5) in the long-course ADT group. Toxicity of grade 3 or higher was reported for 105 (14%) of 753 participants in the short-course ADT group and 142 (19%) of 757 participants in the long-course ADT group (p=0·025), with no treatment-related deaths. Interpretation Compared with adding 6 months of ADT, adding 24 months of ADT improved metastasis-free survival in people receiving postoperative radiotherapy. For individuals who can accept the additional duration of adverse effects, long-course ADT should be offered with postoperative radiotherapy. Funding Cancer Research UK, UK Research and Innovation (formerly Medical Research Council), and Canadian Cancer Society

Egg development time in the Zebra Finch Taeniopygia guttata varies with laying order and clutch size

As female birds are able to lay no more than a single egg each day, in those species producing larger clutches the first laid eggs may get a developmental head-start over later eggs in the clutch. All other things being equal, the differential pattern of development across the clutch may contribute to hatching asynchrony and subsequent inequity in the competition between brood mates, and ultimately increase variance in the quality and fitness of first- and last-laid offspring. It has been suggested that females might allocate resources differently across the laying sequence to moderate the developmental rate and hatching time of different embryos. We tested this theory in the Zebra Finch Taeniopygia guttata, a common model species for investigating maternal effects in birds. We removed 758 eggs from 160 nests shortly after they were laid and used artificial incubators to control for parental effects and monitor hatching times. Eggs from larger clutches consistently hatched sooner than those from average-sized clutches, demonstrating that the intrinsic properties of an egg can alter the developmental time of embryos. There were also differences in the development time of eggs across the laying sequence, but these patterns were weaker, inconsistent and unrelated to sequential investment across the laying sequence in a straightforward way. This study indicates that maternal resource allocation to eggs across the laying sequence and across clutch sizes can influence development times and play a potentially important role in determining the competitive dynamics of broods.9 page(s

Maternal effects on begging behaviour : an experimental demonstration of the effects of laying sequence, hatch order, nestling sex and brood size

Differential resource allocation by females across the laying sequence has been hypothesised as a mechanism through which females could either compensate nestlings that hatch last in asynchronous broods or promote brood reduction. In this study we artificially incubated eggs and cross-fostered offspring to manipulate nestlings' position in the hatching order, to identify whether the competitive ability of nestlings is dependent on position in the laying sequence. In both control and experimentally reversed broods, first hatched chicks had a higher survival than last hatched siblings. Yet, nestlings that hatched from eggs laid in the second half of a clutch begged with a greater intensity than nestlings hatched from eggs laid in the first half of a clutch. In natural broods, the greater begging competitiveness of nestlings from later-laid eggs led to a moderation of sibling competition and these nestlings achieved the same body size and weight as nestlings from eggs laid in the first half of the clutch. The lack of a substantial difference in the size and condition of surviving nestlings in respect to laying order suggests that differential resource allocation across the egg-laying sequence partially compensates for hatching last in asynchronous broods and reduces the negative effects of the nestling size hierarchy. The effect of laying order, brood size and experimental treatment also differed for male and female nestlings. Our study highlights the need to be aware of the complex and subtle effects of nestling sex and laying sequence when investigating genetic and environmental influences on individual fitness.11 page(s

The historical frequency of head-colour morphs in the Gouldian Finch (Erythrura gouldiae)

The endangered Gouldian Finch (Erythura gouldiae) possesses a genetic colour polymorphism in the form of three genetically determined head-colours (yellow, black and red) that coexist in the same population. The spatial and temporal pattern of morph ratios within this species provides insight into the selective pressures acting on and maintaining the different forms. To investigate spatial and temporal patterns in the relative historical abundance of the different Gouldian Finch morphs, we surveyed museum collections around the world, identifying 614 wild-caught skins and obtaining accurate data on the morphs of 552 of these. The yellow morph was found at very low numbers (only 15 skins), consistent with its rarity in contemporary populations. Red- and black-morph individuals were found at relatively constant ratios across the geographical range over which they were sampled, and across the 140-year period during which these skins were collected, although this differed slightly for males and females (males: 62.6% black, 37.4% red; females: 79.1% black, 20.9% red). Spatial and temporal stability in the frequency of alternative morphs is extremely rare. These results suggest that the genetic architecture underlying the trait and selective pressures acting on the separate morphs of the Gouldian Finch differ between the sexes, but are fairly constant across highly variable environmental conditions

The Adaptive benefit of hatching asynchrony in wild zebra finches

The evolutionary consequences of parent-offspring conflict have received considerable attention, yet the extent to which parent-offspring conflict influences life history traits remains uncertain. In particular, it is unclear whether hatching patterns are parental strategies to manipulate competitive dynamics among offspring, or whether they are instead consequences of physiological or ecological variables affecting the payoffs of adjusting the onset of incubation. Here we describe an experiment in which we manipulated the hatching pattern of wild free-living zebra finches. We examined the consequences of hatching pattern on parental feeding behaviour and sibling competition, with the aim of identifying selective pressures that underlie differing hatching patterns. Increasing hatching asynchrony reduced the overall quantity of food that parents delivered and the equitability of its distribution among nestlings compared with synchronous broods. However, for each unit of food received, the begging intensity of nestlings from asynchronous broods was lower. As a consequence, the growth rate of first-hatched nestlings in asynchronous broods was significantly greater than those in synchronous broods, and there was no significant difference in growth rate between last-hatched nestlings in asynchronous broods and nestlings from synchronous broods, even though they received less food overall. The reduced scramble competition and energy wasted on begging behaviour in asynchronous broods supports the sibling rivalry hypothesis, suggesting an adaptive function for hatching asynchrony in wild zebra finches.6 page(s

The Historical frequency of head-colour morphs in the Gouldian Finch (Erythrura gouldiae)

The endangered Gouldian Finch (Erythura gouldiae) possesses a genetic colour polymorphism in the form of three genetically determined head-colours (yellow, black and red) that coexist in the same population. The spatial and temporal pattern of morph ratios within this species provides insight into the selective pressures acting on and maintaining the different forms. To investigate spatial and temporal patterns in the relative historical abundance of the different Gouldian Finch morphs, we surveyed museum collections around the world, identifying 614 wild-caught skins and obtaining accurate data on the morphs of 552 of these. The yellow morph was found at very low numbers (only 15 skins), consistent with its rarity in contemporary populations. Red- and black-morph individuals were found at relatively constant ratios across the geographical range over which they were sampled, and across the 140-year period during which these skins were collected, although this differed slightly for males and females (males: 62.6% black, 37.4% red; females: 79.1% black, 20.9% red). Spatial and temporal stability in the frequency of alternative morphs is extremely rare. These results suggest that the genetic architecture underlying the trait and selective pressures acting on the separate morphs of the Gouldian Finch differ between the sexes, but are fairly constant across highly variable environmental conditions.8 page(s

Incubation behaviour and hatching synchrony differ in wild and captive populations of the zebra finch

Hatching asynchrony is widespread in birds laying clutches containing multiple eggs, yet is seemingly paradoxical as the age and size hierarchies result in asymmetric sibling competition and low survival prospects for late-hatched nestlings. We examined the causes of variation in hatching asynchrony between broods of zebra finch, Taeniopygia guttata, in three environments: domesticated, captive wild and wild free-living. We found that broods of both domesticated and wild birds taken into captivity hatched more asynchronously than wild free-living broods. This was directly attributable to both male and female parents of domesticated and captive wild broods initiating incubation as soon as the first egg was laid as opposed to when the clutch was virtually complete in wild free-living broods. Wild free-living birds that were transferred to captive environments immediately switched to the incubation onset behaviour seen in domesticated birds, thereby demonstrating a previously unsuspected level of intraspecific plasticity in incubation behaviour. This finding suggests that something about the captive environment is driving the early onset of incubation and contributing to an elevated level of hatching asynchrony in captive birds. Across all populations and environments males contributed almost equally to incubation, and the onset of incubation by males was highly coordinated with that of their partner.6 page(s