New England salt pond data book

This volume contains information on New England salt ponds and lagoons. The first part contains abstracts of a symposium on salt ponds and lagoons held in conjunction with the New England Estuarine Research Society (NEERS) on April 21, 1988. These should provide both scientists and managers with an overview of recent research on salt ponds. The second part contains maps, morphometric data, and references for individual salt ponds in Connecticut, Rhode Island, and Massachusetts. The third section is a comprehensive bibliography of papers and reports on salt ponds, including information on ponds located outside of New England. A listing of references organized according to topic areas is also provided.Funding was provided by separate Grants from the Andrew W. Mellon Foundation to the Coastal Research Center, Woods Hole Oceanographic Institution and to The Ecosystems Center, Marine Biological Laboratory

Population Dynamics and Community Composition of Ammonia Oxidizers in Salt Marshes after the Deepwater Horizon Oil Spill

The recent oil spill in the Gulf of Mexico had significant effects on microbial communities in the Gulf, but impacts on nitrifying communities in adjacent salt marshes have not been investigated. We studied persistent effects of oil on ammonia-oxidizing archaeal (AOA) and bacterial (AOB) communities and their relationship to nitrification rates and soil properties in Louisiana marshes impacted by the Deepwater Horizon oil spill. Soils were collected at oiled and unoiled sites from Louisiana coastal marshes in July 2012, 2 years after the spill, and analyzed for community differences based on ammonia monooxygenase genes (amoA). Terminal Restriction Fragment Polymorphism and DNA sequence analyses revealed significantly different AOA and AOB communities between the three regions, but few differences were found between oiled and unoiled sites. Community composition of nitrifiers was best explained by differences in soil moisture and nitrogen content. Despite the lack of significant oil effects on overall community composition, we identified differences in correlations of individual populations with potential nitrification rates between oiled and unoiled sites that help explain previously published correlation patterns. Our results suggest that exposure to oil, even 2 years post-spill, led to subtle changes in population dynamics. How, or if, these changes may impact ecosystem function in the marshes, however, remains uncertain

Marsh-atmosphere CO2 exchange in a New England salt marsh

Author Posting. © American Geophysical Union, 2015. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Biogeosciences 120 (2015): 1825–1838, doi:10.1002/2015JG003044.We studied marsh-atmosphere exchange of carbon dioxide in a high marsh dominated salt marsh during the months of May to October in 2012–2014. Tidal inundation at the site occurred only during biweekly spring tides, during which we observed a reduction in fluxes during day and night. We estimated net ecosystem exchange (NEE), gross primary production (GPP), and ecosystem respiration (Reco) using a modified PLIRTLE model, which requires photosynthetically active radiation, temperature, and normalized difference vegetation index (NDVI) as control variables. NDVI decreased during inundation, when the marsh canopy was submerged. Two-time series of NDVI, including and excluding effects of tidal inundation, allowed us to quantify the flux reduction during inundation. The effect of the flux reduction was small (2–4%) at our site, but is likely higher for marshes at a lower elevation. From May to October, GPP averaged −863 g C m−2, Reco averaged 591 g C m−2, and NEE averaged −291 g C m−2. In 2012, which was an exceptionally warm year, we observed an early start of net carbon uptake but higher respiration than in 2013 and 2014 due to higher-air temperature in August. This resulted in the lowest NEE during the study period (−255.9±6.9 g C m−2). The highest seasonal net uptake (−336.5±6.3 g C m−2) was observed in 2013, which was linked to higher rainfall and temperature in July. Mean sea level was very similar during all 3 years which allowed us to isolate the importance of climatic factors.NSF grants OCE-1058747 and OCE-12382122019-03-2

Constraining marsh carbon budgets using long‐term C burial and contemporary atmospheric CO2 fluxes

Author Posting. © American Geophysical Union, 2018. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Biogeosciences 123 (2018): 867-878, doi:10.1002/2017JG004336.Salt marshes are sinks for atmospheric carbon dioxide that respond to environmental changes related to sea level rise and climate. Here we assess how climatic variations affect marsh‐atmosphere exchange of carbon dioxide in the short term and compare it to long‐term burial rates based on radiometric dating. The 5 years of atmospheric measurements show a strong interannual variation in atmospheric carbon exchange, varying from −104 to −233 g C m−2 a−1 with a mean of −179 ± 32 g C m−2 a−1. Variation in these annual sums was best explained by differences in rainfall early in the growing season. In the two years with below average rainfall in June, both net uptake and Normalized Difference Vegetation Index were less than in the other three years. Measurements in 2016 and 2017 suggest that the mechanism behind this variability may be rainfall decreasing soil salinity which has been shown to strongly control productivity. The net ecosystem carbon balance was determined as burial rate from four sediment cores using radiometric dating and was lower than the net uptake measured by eddy covariance (mean: 110 ± 13 g C m−2 a−1). The difference between these estimates was significant and may be because the atmospheric measurements do not capture lateral carbon fluxes due to tidal exchange. Overall, it was smaller than values reported in the literature for lateral fluxes and highlights the importance of investigating lateral C fluxes in future studies.National Science Foundation Grant Numbers: OCE-1637630, OCE-1238212, 14263082018-08-0

Effects of experimental warming and carbon addition on nitrate reduction and respiration in coastal sediments

Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here by permission of Springer for personal use, not for redistribution. The definitive version was published in Biogeochemistry 125 (2015): 81-95, doi:10.1007/s10533-015-0113-4.Climate change may have differing effects on microbial processes that control coastal N availability. We conducted a microcosm experiment to explore effects of warming and carbon availability on nitrate reduction pathways in marine sediments. Sieved continental shelf sediments were incubated for 12 weeks under aerated seawater amended with nitrate (~50 μM), at winter (4°C) or summer (17°C) temperatures, with or without biweekly particulate organic C additions. Treatments increased diffusive oxygen consumption as expected, with somewhat higher effects of C addition compared to warming. Combined warming and C addition had the strongest effect on nitrate flux across the sediment water interface, with a complete switch early in the experiment from influx to sustained efflux. Supporting this result, vial incubations with added 15N-nitrate indicated that C addition stimulated potential rates of dissimilatory nitrate reduction to ammonium (DNRA), but not denitrification. Overall capacity for both denitrification and DNRA was reduced in warmed treatments, possibly reflecting C losses due to increased respiration with warming. Anammox potential rates were much lower than DNRA or denitrification, and were slightly negatively affected by warming or C addition. Overall, results indicate that warming and C addition increased ammonium production through remineralization and possibly DNRA. This stimulated nitrate production through nitrification, but without a comparable increase in nitrate consumption through denitrification. The response to C of potential DNRA rates over denitrification, along with a switch to nitrate efflux, raises the possibility that DNRA is an important and previously overlooked source of internal N cycling in shelf sediments.This material is based upon work supported by the National Science Foundation by OCE- 0852289 to JJR and OCE-0852263 and OCE-0927400 to AEG, and Rhode Island Sea Grant to JJR

Similar temperature responses suggest future climate warming will not alter partitioning between denitrification and anammox in temperate marine sediments

Author Posting. © The Author(s), 2016. This is the author's version of the work. It is posted here by permission of John Wiley & Sons for personal use, not for redistribution. The definitive version was published in Global Change Biology 23 (2017): 331-340, doi:10.1111/gcb.13370.Removal of biologically available nitrogen (N) by the microbially mediated processes denitrification and anaerobic ammonium oxidation (anammox) affects ecosystem N availability. Although few studies have examined temperature responses of denitrification and anammox, previous work suggests that denitrification could become more important than anammox in response to climate warming. To test this hypothesis, we determined whether temperature responses of denitrification and anammox differed in shelf and estuarine sediments from coastal Rhode Island over a seasonal cycle. The influence of temperature and organic C availability was further assessed in a 12-week laboratory microcosm experiment. Temperature responses, as characterized by thermal optima (Topt) and apparent activation energy (Ea), were determined by measuring potential rates of denitrification and anammox at 31 discrete temperatures ranging from 3 to 59°C. With a few exceptions, Topt and Ea of denitrification and anammox did not differ in Rhode Island sediments over the seasonal cycle. In microcosm sediments, Ea was somewhat lower for anammox compared to denitrification across all treatments. However, Topt did not differ between processes, and neither Ea nor Topt changed with warming or carbon addition. Thus, the two processes behaved similarly in terms of temperature response, and this response was not influenced by warming. This led us to reject the hypothesis that anammox is more cold-adapted than denitrification in our study system. Overall, our study suggests that temperature responses of both processes can be accurately modeled for temperate regions in the future using a single set of parameters, which are likely not to change over the next century as a result of predicted climate warming. We further conclude that climate warming will not directly alter the partitioning of N flow through anammox and denitrification.This material is based upon work supported by the National Science Foundation under Grant No. OCE-0852289 to JJR and OCE-0852263, OCE-0927400 and OCE1238212 to AEG, and Rhode Island Sea Grant to JJR.2017-05-2

Benthic community metabolism in deep and shallow Arctic lakes during 13 years of whole–lake fertilization

Benthic primary production and oxygen consumption are important components of lake biogeochemical cycling. We performed whole–lake nutrient manipulations in Arctic Alaska to assess the controls of lake morphometry, nutrients, and light on benthic community metabolism. One deep, stratified lake (Lake E5) and one shallow, well–mixed lake (Lake E6) in the Alaskan Arctic were fertilized with low levels of nitrogen (56 mg N m−3 yr−1) and phosphorus (8 mg P m−3 yr−1) from 2001 to 2013. Benthic primary production was not stimulated by fertilization in either lake. In the deep lake, decreased water clarity is consistent with an increase in phytoplankton biomass during fertilization. Benthic GPP decreased by 7–47 mg C m−2 d−1 (not statistically significant) and benthic respiration increased from 87 ± 20 to 167 ± 9 (SE) mg C m−2 d−1. The areal hypolimnetic oxygen deficit increased by 15 mg O2 m−2 d−1 each year during the 13 yr of monitoring, apparently driven by lower (more negative) benthic NEP. In the shallow lake, phytoplankton concentration did not change with fertilization. As a result, the light environment did not change and benthic GPP did not decrease. Overall the data suggest that (1) benthic algae are not nutrient limited in either the deep or shallow lake, (2) lake morphometry modulated the overall nutrient impact on benthic metabolism by controlling the response of phytoplankton, and by extension, light and organic carbon supply to the benthos, (3) year–to–year variability in light attenuation explains considerable variability in benthic GPP between lakes and years, (4) correlations between both dissolved organic carbon concentrations and light attenuation coefficients (kd) between lakes suggests a regional control on light attenuation, and (5) the dissolved oxygen concentrations in the deep experimental lake are highly sensitive to nutrient enrichment.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/113758/1/lno10120.pd

Controls of benthic nitrogen fixation and primary production from nutrient enrichment of oligotrophic, Arctic lakes

© The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecosystems 16 (2013): 1550-1564, doi:10.1007/s10021-013-9701-0.We examined controls of benthic dinitrogen (N2) fixation and primary production in oligotrophic lakes in Arctic Alaska, Toolik Field Station (Arctic Long-Term Ecological Research Site). Primary production in many oligotrophic lakes is limited by nitrogen (N), and benthic processes are important for whole-lake function. Oligotrophic lakes are increasingly susceptible to low-level, non-point source nutrient inputs, yet the effects on benthic processes are not well understood. This study examines the results from a whole-lake fertilization experiment in which N and P were added at a relatively low level (4 times natural loading) in Redfield ratio to a shallow (3 m) and a deep (20 m) oligotrophic lake. The two lakes showed similar responses to fertilization: benthic primary production and respiration (each 50–150 mg C m−2 day−1) remained the same, and benthic N2 fixation declined by a factor of three- to fourfold by the second year of treatment (from ~0.35 to 0.1 mg N m−2 day−1). This showed that the response of benthic N2 fixation was de-coupled from the nutrient limitation status of benthic primary producers and raised questions about the mechanisms, which were examined in separate laboratory experiments. Bioassay experiments in intact cores also showed no response of benthic primary production to added N and P, but contrasted with the whole-lake experiment in that N2 fixation did not respond to added N, either alone or in conjunction with P. This inconsistency was likely a result of nitrogenase activity of existing N2 fixers during the relative short duration (9 days) of the bioassay experiment. N2 fixation showed a positive saturating response when light was increased in the laboratory, but was not statistically related to ambient light level in the field, leading us to conclude that light limitation of the benthos from increasing water-column production was not important. Thus, increased N availability in the sediments through direct uptake likely caused a reduction in N2 fixation. These results show the capacity of the benthos in oligotrophic systems to buffer the whole-system response to nutrient addition by the apparent ability for significant nutrient uptake and the rapid decline in N2 fixation in response to added nutrients. Reduced benthic N2 fixation may be an early indicator of a eutrophication response of lakes which precedes the transition from benthic to water-column-dominated systems.This project was supported by NSF-OPP 9732281, NSF-DEB 9810222, NSF-DEB 0423385, and by a Doctoral Dissertation Improvement Grant NSF-DEB 0206173. Additional funding was provided by the Small Grants Program through the NSF-IGERT Program in Biogeochemistry and Environmental Change at Cornell University

Identifying and assessing effectiveness of alternative low-effort nitrogen footprint reductions in small research institutions

© The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Messenger, S., Lloret, J., Galloway, J. N., & Giblin, A. Identifying and assessing effectiveness of alternative low-effort nitrogen footprint reductions in small research institutions. Environmental Research Letters, 16(3), (2021): 035014, https://doi.org/10.1088/1748-9326/abd9f6.Concern over the ecological damage of excess nitrogen has brought increased attention to the role of research institutions and universities in contributing to this problem. Institutions often utilize the concept of the ecological 'footprint' to quantify and track nitrogen emissions resulting from their activities and guide plans and commitments to reduce emissions. Often, large-scale changes and commitments to reduce nitrogen footprints are not feasible at small institutions due to monetary and manpower constraints. We partnered with managers in the dining and facilities departments at the Marine Biological Laboratory (MBL), a small research institution in Woods Hole, Massachusetts, to develop five low-effort strategies to address nitrogen emissions at the institution using only resources currently available within those departments. Each proposed strategy achieved emissions reductions in their sector and in the overall nitrogen footprint of the MBL. If all modelled strategies are applied simultaneously, the MBL can achieve a 7.7% decrease in its nitrogen footprint. Managers at MBL considered strategies that required no monetary input most feasible. The intersection of carbon and nitrogen emissions also means the modelled strategies had the co-benefit of reducing the MBL's carbon footprint, strengthening the argument for applying these strategies. This paper may serve as a model for similar institutions looking to reduce the ecological impact of their activities.The work of the Nitrogen Footprint Tool Network was supported by Cooperative Agreement No. 83563201 awarded by the U.S. Environmental Protection Agency

Effect of continuous light on leaf wax isotope ratios in Betula nana and Eriophorum vaginatum: Implications for Arctic paleoclimate reconstructions

Author Posting. © The Author(s), 2018. This is the author's version of the work. It is posted here under a nonexclusive, irrevocable, paid-up, worldwide license granted to WHOI. It is made available for personal use, not for redistribution. The definitive version was published in Organic Geochemistry 125 (2018): 70-81, doi: 10.1016/j.orggeochem.2018.08.008.Reconstructions of climate using leaf wax D/H ratios (δDwax) require accounting for the apparent isotopic fractionation (εapp) between plant source water and waxes. There have been conflicting publications on whether plants in the Arctic growing under 24-hour continuous light, fractionate less than temperate and tropical plants. In this study, we examine the effect of diurnal light (DL) versus 24-hour continuous light (CL) on the isotopic composition of leaf n-alkanes and n-acids in greenhouse experiments using two common Arctic plants (Eriophorum vaginatum, or tussock cottongrass and Betula nana, or dwarf birch). For E. vaginatum, the δDwax values of various wax homologues were 5–11‰ more positive for CL plants relative to their DL counterparts, whereas for B. nana, CL waxes were 3–24‰ more negative, suggesting that daylight length is not a unifying control on leaf wax D/H ratios of Arctic plants. The δ13Cwax of B. nana was more negative for plants grown in continuous light compared to diurnal light, reflecting lower water-use efficiency, associated with prolonged stomatal opening in the CL treatment. We modeled the impact of increasing stomatal conductance and effective flow path lengths (mimicking variable leaf morphologies) on the isotopic composition of leaf waters (δDlw) and find that variations in leaf-water enrichment may explain the variable δDwax responses seen between E. vaginatum and B. nana. We suggest that between-species differences in the δDlw response to light, and differences in the utilization of stored carbohydrates, were important for governing δDwax. Our greenhouse results suggest that Arctic plant leaf waxes do not consistently display reduced εapp values as a result of 24-hour day light, providing additional support for field observations.We thank Fred Jackson and Chris Claussen of the Brown University Plant Environmental Center for assistance with growth chambers, Chelsea Parker for assistance in plant care, and Rafael Tarozo for laboratory assistance. We want to thank Trevor Porter and three anonymous reviewers for constructive comments to improve the manuscript. This work was funded by NSF Arctic Natural Sciences grant 1503846 to Yongsong Huang and James Russell and NSF-OPP grant 1603214 to Anne Giblin. We also acknowledge graduate support for Will Daniels from the Brown-MBL joint graduate program and the Institute at Brown for Environment and Society