A quantitative model of technology transfer and technological "catch-up"

"#2379"--handwritten on coverIncludes bibliographical reference

Inspiring the Next Generation of Humanitarian Mine Action Researchers

Humanitarian mine action (HMA) is a critically under-researched field when compared to other hazards fields of similar societal impact. A potential solution to this problem is early exposure to and engagement in the HMA field in undergraduate education. Early undergraduate education emphasizing technical and social aspects of HMA can help protect lives by building a robust pipeline of passionate researchers who will find new solutions to the global explosive ordnance (EO) crisis. Early engagement of the next generation of HMA researchers and policy makers can occur through various classroom experiences, undergraduate research projects, and public outreach events. These include but are not limited to course-based undergraduate research experiences (CUREs); presenting research results at local, national, and international conferences; dissemination in edited and peer-reviewed publications; local community events; and through social media outreach. Early engagement, active guidance, and mentorship of such students by mid-career and experienced HMA scholars and practitioners could dramatically reduce the learning curve associated with entry into the HMA sector and allow for more fruitful long-term collaboration between academic institutions, private industry, and leading nongovernmental organizations (NGOs) operating across different facets of HMA

The Random Quadratic Assignment Problem

Optimal assignment of classes to classrooms \cite{dickey}, design of DNA microarrays \cite{carvalho}, cross species gene analysis \cite{kolar}, creation of hospital layouts cite{elshafei}, and assignment of components to locations on circuit boards \cite{steinberg} are a few of the many problems which have been formulated as a quadratic assignment problem (QAP). Originally formulated in 1957, the QAP is one of the most difficult of all combinatorial optimization problems. Here, we use statistical mechanical methods to study the asymptotic behavior of problems in which the entries of at least one of the two matrices that specify the problem are chosen from a random distribution $P$. Surprisingly, this case has not been studied before using statistical methods despite the fact that the QAP was first proposed over 50 years ago \cite{Koopmans}. We find simple forms for $C_{\rm min}$ and $C_{\rm max}$, the costs of the minimal and maximum solutions respectively. Notable features of our results are the symmetry of the results for $C_{\rm min}$ and $C_{\rm max}$ and the dependence on $P$ only through its mean and standard deviation, independent of the details of $P$. After the asymptotic cost is determined for a given QAP problem, one can straightforwardly calculate the asymptotic cost of a QAP problem specified with a different random distribution $P$

No Reliable Association between Runs of Homozygosity and Schizophrenia in a Well-Powered Replication Study

It is well known that inbreeding increases the risk of recessive monogenic diseases, but it is less certain whether it contributes to the etiology of complex diseases such as schizophrenia. One way to estimate the effects of inbreeding is to examine the association between disease diagnosis and genome-wide autozygosity estimated using runs of homozygosity (ROH) in genome-wide single nucleotide polymorphism arrays. Using data for schizophrenia from the Psychiatric Genomics Consortium (n = 21,868), Keller et al. (2012) estimated that the odds of developing schizophrenia increased by approximately 17% for every additional percent of the genome that is autozygous (β = 16.1, CI(β) = [6.93, 25.7], Z = 3.44, p = 0.0006). Here we describe replication results from 22 independent schizophrenia case-control datasets from the Psychiatric Genomics Consortium (n = 39,830). Using the same ROH calling thresholds and procedures as Keller et al. (2012), we were unable to replicate the significant association between ROH burden and schizophrenia in the independent PGC phase II data, although the effect was in the predicted direction, and the combined (original + replication) dataset yielded an attenuated but significant relationship between Froh and schizophrenia (β = 4.86,CI(β) = [0.90,8.83],Z = 2.40,p = 0.02). Since Keller et al. (2012), several studies reported inconsistent association of ROH burden with complex traits, particularly in case-control data. These conflicting results might suggest that the effects of autozygosity are confounded by various factors, such as socioeconomic status, education, urbanicity, and religiosity, which may be associated with both real inbreeding and the outcome measures of interest

Gene expression imputation across multiple brain regions provides insights into schizophrenia risk

Transcriptomic imputation approaches combine eQTL reference panels with large-scale genotype data in order to test associations between disease and gene expression. These genic associations could elucidate signals in complex genome-wide association study (GWAS) loci and may disentangle the role of different tissues in disease development. We used the largest eQTL reference panel for the dorso-lateral prefrontal cortex (DLPFC) to create a set of gene expression predictors and demonstrate their utility. We applied DLPFC and 12 GTEx-brain predictors to 40,299 schizophrenia cases and 65,264 matched controls for a large transcriptomic imputation study of schizophrenia. We identified 413 genic associations across 13 brain regions. Stepwise conditioning identified 67 non-MHC genes, of which 14 did not fall within previous GWAS loci. We identified 36 significantly enriched pathways, including hexosaminidase-A deficiency, and multiple porphyric disorder pathways. We investigated developmental expression patterns among the 67 non-MHC genes and identified specific groups of pre- and postnatal expression