18 research outputs found

    Application of ALOGPS 2.1 to Predict log  D

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    Chemical structures of 43 carboxamides.

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    <p>The most active compounds, with MED < 0.150 µmol/cm<sup>2</sup>, are marked with squares; the least active compounds, with MED > 5 µmol/cm<sup>2</sup>, are marked with circles.</p

    MFTA model: (a) molecular super-graph, (b) factor dynamics, and (c) fit plot.

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    <p>(a) The molecular supergraph is shown with two superimposed structures: DEET and <i>N</i>-cyclohexyl-<i>N</i>-ethyl-3-methylbutanamide (5m). The manner in which structures appear on MSG depends on how they can be superimposed onto the MSG as a whole. (b) The plot displays the change in correlation coefficient (R) and squared cross-validation coefficient (Q<sup>2</sup>) change as the number of factors changes. The best model is the one with the minimum possible number of factors and with R and Q<sup>2</sup> at their highest values.</p

    3D predicted binding mode for YF24 ((1S,2S)-2-phenylcyclohexanol).

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    <p>(<b>B</b>) Atomic details on how <b>YF24</b> binds to OBP1, as depicted by ICM Browser (MolSoft, <a href="http://www.molsoft.com" target="_blank"><u>www.molsoft.com</u></a>). An anchoring interaction that defines the position and orientation of the ligand is the hydrogen bond between the hydroxyl-group of <b>YF24</b> and the backbone carbonyl group of Phe123. The rest of interaction is driven by a set of aromatic and hydrophobic residues, Phe59, Leu76, Trp114, Tyr122 and Phe123, that accommodates the cyclohexylbenzene core. Only proximate residues making contacts with <b>YF24</b> are shown.</p
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