Schmeissneria: A missing link to angiosperms?

BACKGROUND: The origin of angiosperms has been under debate since the time of Darwin. While there has been much speculation in past decades about pre-Cretaceous angiosperms, including Archaefructus, these reports are controversial. The earliest reliable fossil record of angiosperms remains restricted to the Cretaceous, even though recent molecular phylogenetic studies suggest an origin for angiosperms much earlier than the current fossil record. RESULTS: In this paper, after careful SEM and light microscopic work, we report fossils with angiospermous traits of the Jurassic age. The fossils were collected from the Haifanggou Formation (middle Jurassic) in western Liaoning, northeast China. They include two female structures and an associated leaf on the same slab. One of the female structures is physically connected to the apex of a short shoot. The female organs are borne in pairs on short peduncles that are arranged along the axis of the female structure. Each of the female organs has a central unit that is surrounded by an envelope with characteristic longitudinal ribs. Each central unit has two locules completely separated by a vertical septum. The apex of the central unit is completely closed. The general morphology places these fossils into the scope of Schmeissneria, an early Jurassic genus that was previously attributed to Ginkgoales. CONCLUSION: Because the closed carpel is a character only found in angiosperms, the closed apex of the central unit suggests the presence of angiospermy in Schmeissneria. This angiospermous trait implies either a Jurassic angiosperm or a new seed plant group parallel to angiosperms and other known seed plants. As an angiosperm, the Liassic age (earliest Jurassic) of Schmeissneria microstachys would suggest an origin of angiosperms during the Triassic. Although still uncertain, this could have a great impact on our perspective of the history, diversity and systematics of seed plants and angiosperms

The role of foam in improving the workability of sand : insights from DEM

Foam as a soil conditioner can transform the mechanical properties of the excavated natural muck and lubricate the interface between the cutting tools and muck, thus reducing the tools’ wear and promoting the efficiency of earth pressure balance (EPB) shield tunneling. This paper aims to explore the meso-mechanism of foam in improving the workability of sand by combining discrete element modeling (DEM) with experimental investigations of slump tests. A “sand-foam” mixture DEM model was generated by simplifying the sand grains and foam as individual particles with different properties. The particle-scale simulated parameters were calibrated based on a series of experimental observations. The effects of foam on the inter-particle contact distribution and the evolution of contact forces during the slumping process were investigated in detail through numerical modeling. It was found that injecting foam into sand specimens could increase the coordination number and the contact number around sand grains. Although the force transmission pattern changes from “sand-sand” into the coexistence of “sand-foam”, “sand-sand” and “foam-foam” contacts, the magnitude of contact forces transferred by foam particles is significantly lower than that by sand particles. The presence of foam reduces contact-scale frictional strength and thus reduces the stability of the microstructures of sand. In addition, the normal direction of inter-particle contact force deflects from the vertical to the horizontal and the magnitude of contact force decreases significantly with the influence of foam

A Triad of Lys12, Lys41, Arg78 Spatial Domain, a Novel Identified Heparin Binding Site on Tat Protein, Facilitates Tat-Driven Cell Adhesion

Tat protein, released by HIV-infected cells, has a battery of important biological effects leading to distinct AIDS-associated pathologies. Cell surface heparan sulfate protoglycans (HSPGs) have been accepted as endogenous Tat receptors, and the Tat basic domain has been identified as the heparin binding site. However, findings that deletion or substitution of the basic domain inhibits but does not completely eliminate Tat–heparin interactions suggest that the basic domain is not the sole Tat heparin binding site. In the current study, an approach integrating computational modeling, mutagenesis, biophysical and cell-based assays was used to elucidate a novel, high affinity heparin-binding site: a Lys12, Lys41, Arg78 (KKR) spatial domain. This domain was also found to facilitate Tat-driven β1 integrin activation, producing subsequent SLK cell adhesion in an HSPG-dependent manner, but was not involved in Tat internalization. The identification of this new heparin binding site may foster further insight into the nature of Tat-heparin interactions and subsequent biological functions, facilitating the rational design of new therapeutics against Tat-mediated pathological events

Extensive Crosstalk between O-GlcNAcylation and Phosphorylation Regulates Akt Signaling

O-linked N-acetylglucosamine glycosylations (O-GlcNAc) and O-linked phosphorylations (O-phosphate), as two important types of post-translational modifications, often occur on the same protein and bear a reciprocal relationship. In addition to the well documented phosphorylations that control Akt activity, Akt also undergoes O-GlcNAcylation, but the interplay between these two modifications and the biological significance remain unclear, largely due to the technique challenges. Here, we applied a two-step analytic approach composed of the O-GlcNAc immunoenrichment and subsequent O-phosphate immunodetection. Such an easy method enabled us to visualize endogenous glycosylated and phosphorylated Akt subpopulations in parallel and observed the inhibitory effect of Akt O-GlcNAcylations on its phosphorylation. Further studies utilizing mass spectrometry and mutagenesis approaches showed that O-GlcNAcylations at Thr 305 and Thr 312 inhibited Akt phosphorylation at Thr 308 via disrupting the interaction between Akt and PDK1. The impaired Akt activation in turn resulted in the compromised biological functions of Akt, as evidenced by suppressed cell proliferation and migration capabilities. Together, this study revealed an extensive crosstalk between O-GlcNAcylations and phosphorylations of Akt and demonstrated O-GlcNAcylation as a new regulatory modification for Akt signaling

Oxygenated and Nitrated Polycyclic Aromatic Hydrocarbons: Sources, Quantification, Incidence, Toxicity, and Fate in Soil—A Review Study

The genotoxicity, mutagenesis, and carcinogenic effects of polycyclic aromatic hydrocarbon (PAH) derivatives may exceed the parent PAHs. However, their influence on the soil environment has not been explored to a large extent. Oxygenated polycyclic aromatic hydrocarbons (OPAHs) and nitrated polycyclic aromatic hydrocarbons (NPAHs) are typical polar substituted compounds. We offer a review of the literature on the sources, quantification, incidence, toxicity, and transport of these compounds in soil. Although their environmental concentrations are lower than those of their parent compounds, they exert higher toxicity. Both types of substances are basically related to carcinogenesis. OPAHs are not enzymatically activated and can generate reactive oxygen species in biological cells, while NPAHs have been shown to be mutagenic, genotoxic, and cytotoxic. These compounds are largely derived from the transformation of PAHs, but they behave differently in soil because of their higher molecular weight and dissimilar adsorption mechanisms. Therefore, specialized knowledge of model derivatives is required. We also made recommendations for future directions based on existing research. It is expected that the review will trigger scientific discussions and provide a research basis for further study on PAH derivatives in the soil environment

Effect of Phosphorus, Iron, Zinc, and Their Combined Deficiencies on Photosynthetic Characteristics of Rice (<i>Oryza sativa</i> L.) Seedlings

Combined elemental deficiencies are more complex and insidious physiological metabolic responses than single elemental stresses. To determine the effects of phosphorus (P), iron (Fe), zinc (Zn), and their deficient combinations on photosynthetic characteristics of rice seedlings, we investigated their effects on dry weight, chlorophyll (Chl) content, rapid photosynthetic carbon assimilation CO2 responses, and Chl fluorescence in four-week-old rice (CB9 and BJ1 cultivars) seedlings. The results showed that the dry matter, maximum carboxylation efficiency (Vc,max), and maximum electron transfer efficiency (Jmax) of seedlings were all reduced to different degrees under the element deficiency treatments. JIP-test analysis showed that the decrease in the concentration of active PSII reaction centers (RC/ABS) under -Zn treatment was the main reason for the inhibition of performance index PIABS. The -P treatment reduced RC/ABS and inhibited electron transfer (ψEo). Primary photochemical reactions (φPo) of -P-Zn treated seedlings were also inhibited compared to the -P treatment. The -Fe and -Fe-Zn treatments inhibited photosynthesis most severely, which not only reduced RC/ABS but also severely inhibited φPo and ψEo. Notably, the -P-Fe and -P-Fe-Zn treatments of the CB9 improved the RC/ABS, alleviating the limitation of Fe deficiency. These results help enhance the understanding of the complex relationship between nutrient balance and photosynthesis, especially for P, Fe, Zn, and their combined deficiency

ILGNet: inception modules with connected local and global features for efficient image aesthetic quality classification using domain adaptation

In this study, the authors address a challenging problem of aesthetic image classification, which is to label an input image as high‐ or low‐aesthetic quality. We take both the local and global features of images into consideration. A novel deep convolutional neural network named ILGNet is proposed, which combines both the inception modules and a connected layer of both local and global features. The ILGnet is based on GoogLeNet. Thus, it is easy to use a pre‐trained GoogLeNet for large‐scale image classification problem and fine tune their connected layers on a large‐scale database of aesthetic‐related images: AVA, i.e. domain adaptation. The experiments reveal that their model achieves the state of the arts in AVA database. Both the training and testing speeds of their model are higher than those of the original GoogLeNet