Search CORE

4 research outputs found

Analysis of primary microRNA loci from nascent transcriptomes reveals regulatory domains governed by chromatin architecture

Author: Ana Hernández de Sande
Encode Project Consortium
Galaxy Team
Henri Niskanen
Juha Mehtonen
Lasse Sinkkonen
Maria Bouvy-Liivrand
Merja Heinäniemi
Minna Unelma Kaikkonen
Petri Pölönen
Tapio Vuorenmaa
Publication venue: 'Oxford University Press (OUP)'
Publication date
Field of study

Bioportainer Workbench: a versatile and user-friendly system that integrates implementation, management, and use of bioinformatics resources in Docker environments

Author: AbdelBaky
Afgan
Afgan
Afgan
Amazon
Amstutz
Blankenberg
Burrow-Wheeler Aligner for short-read alignment
Century Link Labs
Cicle CI: Continuous integration and delivery
Conda: Open Source Package Management System and Environment Management System.
Dawn
da Veiga Leprevost
Di Tommaso
Docker Project
Galaxy Project
Gentleman
Google Cloud
Grüning
Grüning
Hosny
Huang
Hung
Jackman
Jenkins Project
JSON Manual
Jupyter Project
Kurtzer
Köster
Menegidio
Menegidio
Microsoft Azure
Moreews
Naik
NVIDIA CUDA Toolkit: Develop optimize and deploy GPU-accelerated apps.
NVIDIA cuDNN: GPU accelerated deep learning
NVIDIA-Docker: Build and run Docker containers leveraging NVIDIA GPUs.
O’Connor
PIP - Python Install Package
Planemo: Command-line utilities to assist in developing tools for the Galaxy Project
Play with Docker
Portainer: Simple management UI for Docker.
R Development Core Team
Rancher Labs
RStudio: Integrated Development Environment for R.
Shipyard: Composable Docker Management
Travis CI: Test and deploy with confidence
Publication venue: 'Oxford University Press (OUP)'
Publication date
Field of study

A programming model for Hybrid Workflows: Combining task-based workflows and dataflows all-in-one

Author: Abouelhoda
Afgan
Apache Flink Contributors
Apache Kafka Contributors
Apache Samza Contributors
Apache ZooKeeper Contributors
Badia
Barcelona Centre for Genomic Regulation (CRG)
Barcelona Supercomputing Center (BSC)
Barcelona Supercomputing Center (BSC)
Barcelona Supercomputing Center (BSC)
Barcelona Supercomputing Center (BSC)
Cristian Ramon-Cortes
Damkroger
Dask Development Team
Davis
Dean
Di Tommaso
Filgueira
Francesc Lordan
Galaxy Team
Jain
Jain
Jorge Ejarque
Kreps
Kulkarni
Liang
Lordan
Ludäscher
Oracle and/or its affiliates
Rosa M. Badia
Swift Project Team
Taverna Committers
Tejedor
Toshniwal
University of Chicago
Wilde
Wolstencroft
Workflows and Distributed Computing - Barcelona Supercomputing Center (BSC)
Workflows and Distributed Computing - Barcelona Supercomputing Center (BSC)
Zaharia
Zaharia
Publication venue: 'Elsevier BV'
Publication date
Field of study

core