Exploring Aluminum Tolerance at Seedling Stage in Rice (Oryza Sativa, Linn) by Using Modified Magnavaca Nutrient Solution

Aluminum (Al) toxicity is considered as one of the main constraints for crop production in acidic soil. This study was subjected to observe the response of root and shoot growth of eight rice varieties under Al stress in hydrophonic solution. A modified Magnavaca's solution was used to compare the effect of Al stress using different variables which were relative root elongation (RRE), relative shoot length (RSL) and relative root weight (RRW). The experiment was conducted in split-plot experimental design. Eight rice varieties were screened in four Al levels (0 μM, 540 μM, 750 μM, and 1,300 μM). Root length, shoot length,and root dry weight were measured after 7 days of treatment, then the RRE, RSL, and RRW were calculated. The results showed that Al significantly reduced RRE and RSL but increased RRW. RSL was reduced as the Al concentration increased while RRE reduction started only at 750 μM Al concentration. It was observed that RRW was significantly higher under 540 and 750 μM Al concentration. However, no significant difference was observed in 1,300 μM Al concentration. The increase in root weight is partly attributed by the thickening of the root wall, but this effect was diminished due to root hair inhibition under 1,300 μM Al concentration. Among these three variables observed, root and shoot lengths indicated better variables in determining Al tolerance in rice, compared to root weight. However, these variables were not sufficient to represent root and shoot growth inhibition, and not sufficient to be used solely for Al toxicity screenin

Genome-Wide Association Mapping in a Rice MAGIC Plus Population Detects QTLs and Genes Useful for Biofortification

The development of rice genotypes with micronutrient-dense grains and disease resistance is one of the major priorities in rice improvement programs. We conducted Genome-wide association studies (GWAS) using a Multi-parent Advanced Generation Inter-Cross (MAGIC) Plus population to identify QTLs and SNP markers that could potentially be integrated in biofortification and disease resistance breeding. We evaluated 144 MAGIC Plus lines for agronomic and biofortification traits over two locations for two seasons, while disease resistance was screened for one season in the screen house. X-ray fluorescence technology was used to measure grain Fe and Zn concentrations. Genotyping was carried out by genotype by sequencing and a total of 14,242 SNP markers were used in the association analysis. We used Mixed linear model (MLM) with kinship and detected 57 significant genomic regions with a -log10 (P-value) ≥ 3.0. The PH1.1 and Zn7.1 were consistently identified in all the four environments, ten QTLs qDF3.1, qDF6.2qDF9.1qPH5.1qGL3.1, qGW3.1, qGW11.1, and qZn6.2 were detected in two environments, while two major loci qBLB11.1 and qBLB5.1 were identified for Bacterial Leaf Blight (BLB) resistance. The associated SNP markers were found to co-locate with known major genes and QTLs such as OsMADS50 for days to flowering, osGA20ox2 for plant height, and GS3 for grain length. Similarly, Xa4 and xa5 genes were identified for BLB resistance and Pi5(t), Pi28(t), and Pi30(t) genes were identified for Blast resistance. A number of metal homeostasis genes OsMTP6, OsNAS3, OsMT2D, OsVIT1, and OsNRAMP7 were co-located with QTLs for Fe and Zn. The marker-trait relationships from Bayesian network analysis showed consistency with the results of GWAS. A number of promising candidate genes reported in our study can be further validated. We identified several QTLs/genes pyramided lines with high grain Zn and acceptable yield potential, which are a good resource for further evaluation to release as varieties as well as for use in breeding programs

Screening for Resistance in Selected Tomato Varieties against the Root-Knot Nematode <i>Meloidogyne incognita</i> in the Philippines Using a Molecular Marker and Biochemical Analysis

Tomato is a high-value vegetable crop widely cultivated in the Philippines, and its production is threatened by various stresses including infection by the root-knot nematode M. incognita. In this study, we checked for resistance to M. incognita in selected tomato germplasm collections and commercially available varieties using a bioassay method, the molecular marker Mi23 and biochemical analysis. Among the eight varieties tested, none showed a resistant reaction against M. incognita. Use of the molecular marker Mi23 yielded 430 bp in all the tomato varieties screened. Phylogenetic analysis using the neighbor-joining method revealed the clustering of consensus sequence of the varieties tested with the susceptible variety S. lycopersicum cv. M82-1-8 and a wild relative, S. pimpinellifolium isolate LA2184. The biochemical analysis showed varying responses among the varieties when they were inoculated with M. incognita. Increased levels of total antioxidant activity were observed in Diamante Max F1, Ilocos Red and Tm 2016 11-1, while total phenolic content was found to be elevated in Athena, Avatar TY F1 and Rosanna. Increased levels of ascorbic acid were observed in Athena and Avatar TY F1 even at 45 dpi. Even though these varieties showed elevated levels of the abovementioned biochemical parameters related to a resistance reaction, all of them showed highly susceptible reactions. Hence, this study showed that these tomato varieties have no resistance against M. incognita and that there is a need to identify other sources of resistance against M. incongita and produce resistant tomato cultivars adapted to local conditions

GENETIC DIVERSITY OF NATURAL POPULATIONS OF BACTROCERA OCCIPITALIS (BEZZI) AND B. PHILIPPINENSIS DREW AND HANCOCK (DIPTERA: TEPHRITIDAE) IN SELECTED MANGO PRODUCING AREAS IN THE PHILIPPINES USING MICROSATELLITES

Using nine microsatellite loci, the genetic diversity of natural populations of Bactrocera occipitalis and B. philippinensis was investigated. Estimates of genetic diversity based on allele number (na and ne), heterozygosity (Ho and He) and Shannon information index (I) revealed that the Cavite population was the most genetically diverse (na = 18.56; ne = 12.88; Ho = 0.58; He = 0.89; I = 2.55) and Pangasinan was the least (na = 7.89; ne = 8.94; Ho = 0.34; He = 0.87; I = 2.31). Among groups, the intermediates were the most genetically diverse (na = 25.44; ne = 15.30; Ho = 0.52; He = 0.92; I = 2.85) and B. philippinensis was the least (na = 17.44; Ho = 0.44; He = 0.90; I = 2.54). A low level of genetic diversity was detected among populations. Pangansinan and Palawan populations were the most related while Palawan and Guimaras populations were the least. Among groups, B. occipitalis and intermediates were the most related while B. occipitalis and B. philippinesis were the least. Dendrogram analysis indicated that B. occipitalis, B. philippinensis, and intermediates are not genetically distinct from each other