Random amplified polymorphic DNA (RAPD) markers for genetic analysis in Allium

RAPD analysis was applied to onion (Allium cepa) and otherAllium species in order to assess the degree of polymorphism within the genus and to investigate if this approach was suitable for genetic studies of onion. Seven cultivars ofA. cepa, including shallot, and single cultivars of Japanese bunching onion (A. fistulosum), chive (A. schoenoprasum), leek (A. ampeloprasum), and a wild relative of onion (A. roylei), were evaluated for variability using a set of 20 random 10-mer primers. Seven out of the twenty primers revealed scorable polymorphisms between cultivars ofA. cepa and these will be further evaluated for use in genetic mapping. Wide variations in banding profiles between species were observed with nearly every primer tested. These were assessed for use in systematic studies within the genus. Ninety-one band positions were scored (+/-) for all the cultivars studied. Genetic distances between each of the cultivars were calculated and cluster analysis was used to generate a dendrogram showing phylogenetic relationships between them. The resulting analysis was in broad agreement with previous classifications of the species studied, confirming the validity of the method. However, amongst the species studied, it placedA. roylei as the closest relative ofA. cepa, questioning the current classification of the former species in the section RhizideumPeer reviewe

Biodiversity of “Non-model” Rickettsiales and Their Association with Aquatic Organisms

Representatives of the order Rickettsiales are obligate intracellular bacteria, traditionally including well-studied pathogens of humans and other vertebrates, such as Rickettsia, Orientia, Anaplasma, and Ehrlichia. In the last two decades, studies based on molecular characterization techniques have reshaped our view on the biodiversity of Rickettsiales, and the eukaryotic hosts they can exploit. Several new genera have been described in “traditional” Rickettsiales families Rickettsiaceae and Anaplasmataceae. Moreover, a new family, “Candidatus Midichloriaceae,” displaying diversity at least comparable with the “traditional” ones, has been described. Recent data show that the majority of extant genera of Rickettsiales (16 out of 24) are hosted exclusively (or at least partly) by aquatic organisms, such as protists (e.g., ciliates, amoebas, flagellates), and animals (e.g., cnidarians, mollusks, tunicates, leeches), while only ten genera include some terrestrial host, such as arthropods. Given the highly interwoven phylogenetic relationships among Rickettsiales hosted by aquatic and terrestrial hosts, it is likely that the ancestral host of Rickettsiales was an aquatic protist organism, and the adaptation to terrestrial environments occurred independently in several distinct sublineages at least six times. Newly discovered lineages of “non-model” Rickettsiales present unforeseen features for the order such as the presence of flagella. Future investigations on “non-model” Rickettsiales are crucial to gain insight on the evolutionary history of the whole group, including the origin of molecular mechanisms involved in pathogenesis for humans and vertebrates