Additional file 14: of Genome-wide identification and characterization of InDels and SNPs in Glycine max and Glycine soja for contrasting seed permeability traits

Table S3. List of forward and reverse primers designed for detection of DNA polymorphism and real-time analysis for selected genes. (DOC 30 kb

Additional file 4: of Genome-wide identification and characterization of InDels and SNPs in Glycine max and Glycine soja for contrasting seed permeability traits

Identification of total InDels in G. soja with respect to reference genome. (CSV 97568 kb

Additional file 3: of Genome-wide identification and characterization of InDels and SNPs in Glycine max and Glycine soja for contrasting seed permeability traits

Identification of total SNPs in G. soja with respect to reference genome. (XLSX 19576 kb

Additional file 10: of Genome-wide identification and characterization of InDels and SNPs in Glycine max and Glycine soja for contrasting seed permeability traits

Figure S4. DNA polymorphism analysis of genes in G. max (Gm) and G. soja (Gs) in order Anthranilate n-hydroxy cinnamoyl/benzoyl transferase, Chalcone flavone isomerase, Abscisic acid insensitive 5, Phospholipase D, TypeI- Inositol polyphosphate 5 phosphatase1, E3 Ubiquitin ligase and Glycosyltransferase. (JPG 111 kb

Additional file 7: of Genome-wide identification and characterization of InDels and SNPs in Glycine max and Glycine soja for contrasting seed permeability traits

Figure S2. GO annotation of 205 interacting partners of 7 selected genes into molecular functions. (PNG 307 kb

Additional file 13: of Genome-wide identification and characterization of InDels and SNPs in Glycine max and Glycine soja for contrasting seed permeability traits

Figure S6. Seeds of G. soja and G. max before (Control seeds, 0 h) and after water imbibition of 6 h. (JPG 7 kb

Additional file 12: of Genome-wide identification and characterization of InDels and SNPs in Glycine max and Glycine soja for contrasting seed permeability traits

Table S2. Statistics of E3 Ubiquitin ligase protein structural predictions in G. max and G. soja (TM score: Template Modeling score, RMSD: root mean square deviation). (DOC 34 kb

Additional file 2: of Genome-wide identification and characterization of InDels and SNPs in Glycine max and Glycine soja for contrasting seed permeability traits

Identification of total SNPs and InDels in G. max with respect to the reference genome. (XLSX 44647 kb

Additional file 9: of Genome-wide identification and characterization of InDels and SNPs in Glycine max and Glycine soja for contrasting seed permeability traits

Functional annotation of 205 interacting patterns as identified for 7 selected genes. (XLS 184 kb

Additional file 11: of Genome-wide identification and characterization of InDels and SNPs in Glycine max and Glycine soja for contrasting seed permeability traits

Figure S5. Pairwise alignment (a) of protein sequence of E3 Ubiquitin ligase from G. max and G. soja, (b) 3D structure of protein in G. max and G. soja as predicted by I-TASSER, (c) Structural superimposition of protein obtained through Chimera (Gm and Gs represent G. max and G. soja, respectively). (JPG 154 kb