Prediction of biopore- and matrix-dominated flow from X-ray CT-derived macropore network characteristics

Peer reviewedPublisher PD

PMI: A Delta Psi(m) Independent Pharmacological Regulator of Mitophagy

Mitophagy is central to mitochondrial and cellular homeostasis and operates via the PINK1/Parkin pathway targeting mitochondria devoid of membrane potential (ΔΨm) to autophagosomes. Although mitophagy is recognized as a fundamental cellular process, selective pharmacologic modulators of mitophagy are almost nonexistent. We developed a compound that increases the expression and signaling of the autophagic adaptor molecule P62/SQSTM1 and forces mitochondria into autophagy. The compound, P62-mediated mitophagy inducer (PMI), activates mitophagy without recruiting Parkin or collapsing ΔΨm and retains activity in cells devoid of a fully functional PINK1/Parkin pathway. PMI drives mitochondria to a process of quality control without compromising the bio-energetic competence of the whole network while exposing just those organelles to be recycled. Thus, PMI circumvents the toxicity and some of the nonspecific effects associated with the abrupt dissipation of ΔΨm by ionophores routinely used to induce mitophagy and represents a prototype pharmacological tool to investigate the molecular mechanisms of mitophagy

Spatial variability of throughfall water and chemistry and forest floor water content in a Douglas fir forest stand

International audienceThis study focuses on spatial variability of throughfall water and chemistry and forest floor water content within a Douglas fir (Pseudotsuga menziesii, Franco L.) forest plot. Spatial patterns of water and chemistry (NH4+, NO3?, SO42-, Cl?, Mg2+, Ca2+, Na+ and K+) were compared and tested for stability over time. The spatial coefficient of variation (CV) was between 18 and 26% for amounts of throughfall water and ions, and 17% for forest floor water content. Concentrations and amounts of all ions were correlated significantly. Ion concentrations were negatively correlated with throughfall water amounts, but, except for NH4+, there was no such relation between throughfall water and ion amounts. Spatial patterns of throughfall water fluxes and forest floor water contents were consistent over time; patterns of ion fluxes were somewhat less stable. Because of the spatial variability of forest floor thickness and drainage, it was not possible to relate patterns in throughfall water directly to patterns in water content. The spatial variability of throughfall nitrogen and forest floor water contents can cause significant variability in NO3? production within the plot studied. Keywords: nutrient throughfall, forest floor water, spatial variability, time-stability, nitrogen</p

Spin alignment of dark matter haloes in filaments and walls

The MMF technique is used to segment the cosmic web as seen in a cosmological N-body simulation into wall-like and filament-like structures. We find that the spins and shapes of dark matter haloes are significantly correlated with each other and with the orientation of their host structures. The shape orientation is such that the halo minor axes tend to lie perpendicular to the host structure, be it a wall or filament. The orientation of the halo spin vector is mass dependent. Low mass haloes in walls and filaments have a tendency to have their spins oriented within the parent structure, while higher mass haloes in filaments have spins that tend to lie perpendicular to the parent structure.Comment: 4 pages, 2 figure

Spatial variation of aerosol properties over Europe derived from satellite observations and comparison with model calculations

International audienceAerosol optical depths (AOD) and Angström coefficients over Europe were retrieved using data from the ATSR-2 radiometer on board the ESA satellite ERS-2, for August 1997. Taking advantage of the nadir and forward view of the ATSR-2, the dual view algorithm was used over land to eliminate the influence of the surface reflection. Over sea the AOD was retrieved using only the forward observations. Retrieved aerosol optical properties are in good agreement with those from ground-based sunphotometers. The AOD and Angström coefficients together yield information on the column integrated effective aerosol distribution. Observed regional variations of the AOD and Angström coefficient are related to anthropogenic emissions of aerosol precursors such as SO2 and NOx in the major European industrial and urban areas, and their subsequent transformation into the aerosol phase. The influence of anthropogenic aerosols such as ammonium sulphate and ammonium nitrate on the total AOD is estimated using a regional chemistry transport model. Sulphate is estimated to contribute from 15% in very clean areas to 70% in polluted areas, the contribution of nitrate is between 5% and 25% over most of Europe. This paper shows the great importance of nitrate in summer over The Netherlands

Spatial variation of aerosol properties derived from satellite observations

International audienceAerosol optical depths (AOD) and Angström coefficients over Europe were retrieved using data from the ATSR-2 radiometer on board the ESA satellite ERS-2, for August 1997. Taking advantage of the nadir and forward view of the ATSR-2, the dual view algorithm was used over land to eliminate the influence of the surface reflection. Over sea the AOD was retrieved using only the forward observations. Retrieved aerosol optical properties are in good agreement with those from ground-based sunphotometers. The AOD and Angström coefficients together yield information on the column integrated effective aerosol distribution. Observed regional variations of the AOD and Angström coefficient are related to anthropogenic emissions of aerosol precursors such as SO2 and NOx in the major European industrial and urban areas, and their subsequent transformation into the aerosol phase. The influence of anthropogenic aerosols such as ammonium sulphate and ammonium nitrate on the total AOD is estimated using a regional chemistry transport model. Sulphate is estimated to contribute from 15% in very clean areas to 70% in polluted areas, the contribution of nitrate is between 5% and 25% over most of Europe. This paper shows the great importance of nitrate in summer over The Netherlands

"The difference that makes a difference": highlighting the role of variable contexts within an HIV Prevention Community Randomised Trial (HPTN 071/PopART) in 21 study communities in Zambia and South Africa.

This paper explores contextual heterogeneity within a community randomised trial HPTN 071 (Population Effects of Antiretroviral Treatment to Reduce HIV Transmission) carried out in 21 study communities (12 Zambian, 9 South African). The trial evaluates the impact of a combination HIV prevention package (including household-based HIV counselling and testing and anti-retroviral treatment (ART) eligibility regardless of CD4-count) on HIV incidence. The selection, matching and randomisation of study communities relied on key epidemiological and demographic variables and community and stakeholder support. In 2013, following the selection of study communities, a "Broad Brush Survey" (BBS) approach was used to rapidly gather qualitative data on each study community, prior to the implementation of the trial intervention. First-year process indicator intervention data (2014-2015) were collected during the household-based intervention by community lay workers. Using an open/closed typology of urban communities (indicating more or less heterogeneity), this qualitative inquiry presents key features of 12 Zambian communities using a list of four meta-indicators (physical features, social organisation, networks and community narratives). These indicators are then compared with four intervention process indicators in a smaller set of four study communities. The process indicators selected for this analysis indicate response to the intervention (uptake) amongst adults. The BBS qualitative data are used to interpret patterns of similarity and variability in the process indicators across four communities. We found that meta-indicators of local context helped to interpret patterns of similarity and variability emerging across and within the four communities. Features especially significant for influencing heterogeneity in process indicators include proportion of middle-class residents, proximity to neighbouring communities and town centre, the scale of the informal economy, livelihood-linked mobility, presence of HIV stakeholders over time and commitment to community action. Future interdisciplinary analysis is needed to explore if these patterns of difference continue to hold up over the full intervention period and all intervention communities

Infinitely many states and stochastic symmetry in a Gaussian Potts-Hopfield model

We study a Gaussian Potts-Hopfield model. Whereas for Ising spins and two disorder variables per site the chaotic pair scenario is realized, we find that for q-state Potts spins [{q(q-1} \over 2]-tuples occur. Beyond the breaking of a continous stochastic symmetry, we study the fluctuations and obtain the Newman-Stein metastate description for our model.Comment: latex, 17 page

ZOBOV: a parameter-free void-finding algorithm

ZOBOV (ZOnes Bordering On Voidness) is an algorithm that finds density depressions in a set of points, without any free parameters, or assumptions about shape. It uses the Voronoi tessellation to estimate densities, which it uses to find both voids and subvoids. It also measures probabilities that each void or subvoid arises from Poisson fluctuations. This paper describes the ZOBOV algorithm, and the results from its application to the dark-matter particles in a region of the Millennium Simulation. Additionally, the paper points out an interesting high-density peak in the probability distribution of dark-matter particle densities.Comment: 10 pages, 8 figures, MNRAS, accepted. Added explanatory figures, and better edge-detection methods. ZOBOV code available at http://www.ifa.hawaii.edu/~neyrinck/vobo