Attainment of reproductive competence, phase transition, and quantification of juvenility in mutant genetic screens

Plant development between seedling emergence and flowering is characterized by a series of successive qualitative phases: (1) a post embryonic photoperiodinsensitive phase, during which plants are insensitive to photoperiod; (2) a photoperiod- sensitive inductive phase, in which plants require a number of short day (SD) or long day (LD) inductive cycles, depending on their age for rapid flowering, and (3) a photoperiod-insensitive post-inductive phase, in which plant development is no longer influenced by photoperiod (Figure 1; Matsoukas et al., 2013)

Robust oscillations in SIS epidemics on adaptive networks: Coarse-graining by automated moment closure

We investigate the dynamics of an epidemiological susceptible-infected-susceptible (SIS) model on an adaptive network. This model combines epidemic spreading (dynamics on the network) with rewiring of network connections (topological evolution of the network). We propose and implement a computational approach that enables us to study the dynamics of the network directly on an emergent, coarse-grained level. The approach sidesteps the derivation of closed low-dimensional approximations. Our investigations reveal that global coupling, which enters through the awareness of the population to the disease, can result in robust large-amplitude oscillations of the state and topology of the network.Comment: revised version 6 pages, 4 figure

A New Microtensile Tester for the Study of MEMS Materials with the Aid of Atomic Force Microscopy

An apparatus has been designed and implemented to measure the elastic tensile properties (Young's modulus and tensile strength) of surface micromachined polysilicon specimens. The tensile specimens are "dog-bone" shaped ending in a large "paddle" for convenient electrostatic or, in the improved apparatus, ultraviolet (UV) light curable adhesive gripping deposited with electrostatically controlled manipulation. The typical test section of the specimens is 400 µm long with 2 µm x 50 µm cross section. The new device supports a nanomechanics method developed in our laboratory to acquire surface topologies of deforming specimens by means of Atomic Force Microscopy (AFM) to determine (fields of) strains via Digital Image Correlation (DIC). With this tool, high strength or non-linearly behaving materials can be tested under different environmental conditions by measuring the strains directly on the surface of the film with nanometer resolution

Equation-free analysis of a dynamically evolving multigraph

In order to illustrate the adaptation of traditional continuum numerical techniques to the study of complex network systems, we use the equation-free framework to analyze a dynamically evolving multigraph. This approach is based on coupling short intervals of direct dynamic network simulation with appropriately-defined lifting and restriction operators, mapping the detailed network description to suitable macroscopic (coarse-grained) variables and back. This enables the acceleration of direct simulations through Coarse Projective Integration (CPI), as well as the identification of coarse stationary states via a Newton-GMRES method. We also demonstrate the use of data-mining, both linear (principal component analysis, PCA) and nonlinear (diffusion maps, DMAPS) to determine good macroscopic variables (observables) through which one can coarse-grain the model. These results suggest methods for decreasing simulation times of dynamic real-world systems such as epidemiological network models. Additionally, the data-mining techniques could be applied to a diverse class of problems to search for a succint, low-dimensional description of the system in a small number of variables