Genome-Wide Identification, Evolution, and Co-expression Network Analysis of Mitogen-Activated Protein Kinase Kinase Kinases in Brachypodium distachyon

Mitogen-activated protein kinase (MAPK) cascades are the conserved and universal signal transduction modules in all eukaryotes, which play the vital roles in plant growth, development and in response to multiple stresses. In this study, we used bioinformatics methods to identify 86 MAPKKK protein encoded by 73 MAPKKK genes in Brachypodium. Phylogenetic analysis of MAPKKK family from Arabidopsis, rice and Brachypodium has classified them into three subfamilies, of which 28 belonged to MEKK, 52 to Raf and 6 to ZIK subfamily respectively. Conserved protein motif, exon-intron organization and splicing intron phase in kinase domains supported the evolutionary relationships inferred from the phylogenetic analysis. And gene duplication analysis suggested the chromosomal segment duplication happened before the divergence of the rice and Brachypodium, while all of three tandem duplicated gene pairs happened after their divergence. We further demonstrated that the MAPKKKs have evolved under strong purifying selection, implying the conservation of them. The splicing transcripts expression analysis showed that the splicesome translating longest protein tended to be adopted. Furthermore, the expression analysis of BdMAPKKKs in different organs and development stages as well as heat, virus and drought stresses revealed that the MAPKKK genes were involved in various signaling pathways. And the circadian analysis suggested there were 41 MAPKKK genes in Brachypodium showing cycled expression in at least one condition, of which seven MAPKKK genes expressed in all conditions and the promoter analysis indicated these genes possessed many cis-acting regulatory elements involved in circadian and light response. Finally, the co-expression network of MAPK, MAPKK and MAPKKK in Brachypodium was constructed using 144 microarray and RNA-seq datasets, and ten potential MAPK cascades pathway were predicted. To conclude, our study provided the important information for evolutionary and functional characterization of MAPKKK family in Brachypodium, which will facilitate the functional analysis of BdMAPKKK genes, and also will facilitate better understanding the MAPK signal pathway in Brachypodium and beyond

The Mass-Metallicity Relation of Dwarf Galaxies at the Cosmic Noon in the JWST Era

We present the mass-metallicity relation (MZR) at $z=2-3$ in the stellar mass range of $M_\star\approx 10^{6.5}-10^{9.5}M_\odot$ using 55 dwarf galaxies in the Abell 2744 and SMACS J0723-3732 galaxy cluster fields. These dwarf galaxies are identified and confirmed by deep JWST/NIRISS imaging and slitless grism spectroscopic observations. Taking advantage of the gravitational lensing effect, we extend the previous MZR relation at $z=2-3$ to a much lower mass regime by more than 2.5 orders of magnitude compared with previous studies. We find that the MZR has a shallower slope at the low-mass end ($M_\star<10^{9}M_\odot$) compared to that at the high-mass end ($M_\star>10^{9}M_\odot$), with a slope turnover point at around the stellar mass of $10^9 M_\odot$. This implies that dominating feedback processes in dwarf galaxies may be different from that in galaxies with higher mass. From $z=3$ to $z=2$, the metallicity of the dwarf galaxies is enhanced by $\approx0.1$ dex for a given stellar mass, consistent with the mild evolution found in galaxies with higher mass. Further, we confirm the existence of a 3D relation between the gas-phase metallicity, stellar mass, and star formation rate, i.e., fundamental metallicity relation (FMR), in dwarf galaxies at $z=2-3$. Our derived FMR, which has no significant redshift evolution, can be used as a benchmark to understand the origin of the anti-correlation between SFR and metallicity of dwarf galaxies in the high-redshift Universe.Comment: 16 pages, 4 figures, 1 table, submitted to AAS Journal; welcome comment

Metal-Enriched Neutral Gas Reservoir around a Strongly-lensed, Low-mass Galaxy at z=4z=4 Identified by JWST/NIRISS and VLT/MUSE

Direct observations of low-mass, low-metallicity galaxies at $z\gtrsim4$ provide an indispensable opportunity for detailed inspection of the ionization radiation, gas flow, and metal enrichment in sources similar to those that reionized the Universe. Combining the James Webb Space Telescope (JWST), VLT/MUSE, and ALMA, we present detailed observations of a strongly lensed, low-mass ($\approx 10^{7.6}$ ${\rm M}_\odot$) galaxy at $z=3.98$ (also see Vanzella et al. 2022). We identify strong narrow nebular emission, including CIV $\lambda\lambda1548,1550$, HeII $\lambda1640$, OIII] $\lambda\lambda1661,1666$, [NeIII] $\lambda3868$, [OII] $\lambda3727$, and Balmer series of Hydrogen from this galaxy, indicating a metal-poor HII region ($\lesssim 0.12\ {\rm Z}_\odot$) powered by massive stars. Further, we detect a metal-enriched damped Ly$\alpha$ system (DLA) associated with the galaxy with the HI column density of $N_{\rm{HI}}\approx 10^{21.8}$ cm$^{-2}$. The metallicity of the associated DLA may reach the super solar metallicity (${\gtrsim Z}_\odot$). Moreover, thanks to JWST and gravitational lensing, we present the resolved UV slope ($\beta$) map at the spatial resolution of $\approx 100$ pc at $z=4$, with steep UV slopes reaching $\beta \approx -2.5$ around three star-forming clumps. Combining with low-redshift analogs, our observations suggest that low-mass, low-metallicity galaxies, which dominate reionization, could be surrounded by a high covering fraction of the metal-enriched, neutral-gaseous clouds. This implies that the metal enrichment of low-mass galaxies is highly efficient, and further support that in low-mass galaxies, only a small fraction of ionizing radiation can escape through the interstellar or circumgalactic channels with low column-density neutral gas.Comment: 4 pages, 1 table; submitted to the ApJL; welcome comment

Correlation and Community Stability Analysis of Herbaceous Plants in Dashiwei Tiankeng Group, China

Studying the interspecific association and stability of herbaceous communities in different developmental stages of tiankeng is helpful to understand the relationship between tiankeng vegetation and the environment, and can provide an important theoretical basis for the protection and restoration of the karst tiankeng ecosystem. In this study, the herbaceous community of the Dashiwei Tiankeng Group in Guangxi was studied to analyze the interspecific relationships and community stability of herbaceous plants in four different habitats (the earlier stage, middle stage, late stage and the external forest of tiankeng), and to explore whether the herbaceous community structure gradually stabilized with the development of tiankeng. The variance ratio (VR), X2 test, association coefficient (JI) and the Spearman rank correlation coefficient test were used to analyze the interspecific association of the main herbaceous plants in different developmental stages of tiankeng. The stability of the herbaceous community was analyzed by the stability measurement method of M. Godron. The results showed that: (1) the logarithm of the middle stage of tiankeng negatively correlated species was the highest (56.7%), and the logarithm of the later stage of tiankeng positively correlated species was the highest (57.2%). The positive and negative correlation ratio of main herbs decreased first and then increased, indicating that the middle stage of development was the period of high competition among herbs and the biggest difference in resource utilization. The ecological habits of herbaceous plants will be changed from sciophiles to hygrophytes to heliophiles and drought-enduring plants. (2) The earlier stage and middle stage of tiankeng overall relevance had a significant negative correlation, the later stage and external forest of tiankeng overall correlation were not significant positive correlation, and the X2 test and the Spearman rank correlation coefficient of different developmental stages of tiankeng most major herbaceous species were not significant correlation, suggesting that the major herbs in tiankengs had weak association and strong independence. (3) The distance from the intersection point to the stable point (20, 80) was 19.799, 17.867, 18.922 and 17.706, respectively, of the four regression models of tiankengs herb community, which further indicated that the forest herb layers were in an unstable state. The forest outside is relatively more stable than the herbaceous community inside the tiankeng

Proteomic and Mutant Analysis of Hydrogenase Maturation Protein Gene <i>hypE</i> in Symbiotic Nitrogen Fixation of <i>Mesorhizobium huakuii</i>

Hydrogenases catalyze the simple yet important redox reaction between protons and electrons and H2, thus mediating symbiotic interactions. The contribution of hydrogenase to this symbiosis and anti-oxidative damage was investigated using the M. huakuii hypE (encoding hydrogenase maturation protein) mutant. The hypE mutant grew a little faster than its parental 7653R and displayed decreased antioxidative capacity under H2O2-induced oxidative damage. Real-time quantitative PCR showed that hypE gene expression is significantly up-regulated in all the detected stages of nodule development. Although the hypE mutant can form nodules, the symbiotic ability was severely impaired, which led to an abnormal nodulation phenotype coupled to a 47% reduction in nitrogen fixation capacity. This phenotype was linked to the formation of smaller abnormal nodules containing disintegrating and prematurely senescent bacteroids. Proteomics analysis allowed a total of ninety differentially expressed proteins (fold change > 1.5 or p supplying energy and electrons, in bacterial detoxification, and in the control of bacteroid differentiation and senescence

Dynamic Replacement of Soil Inorganic Carbon under Water Erosion

The dynamic replacement of soil organic carbon represents a pivotal mechanism through which water erosion modulates soil–atmosphere CO2 fluxes. However, the extent of this dynamic replacement of soil inorganic carbon within this process remains unclear. In our study, we focused on Yuanmou County, China, a prototypical region afflicted by water erosion, as our study area. We leveraged the WaTEM/SEDEM model to quantify the dynamic replacement of soil carbon, accounted for the average annual net change in soil carbon pools, and used isotope tracer techniques to track and measure the process of the coupled carbon–water cycling. This comprehensive approach enabled us to scrutinize the dynamic replacement of soil carbon under water erosion and delineate its ramifications for the carbon cycle. Our findings unveiled that the surface soil carbon reservoir in the Yuanmou area receives an annual replacement of 47,600 ± 12,600 tons following water erosion events. A substantial portion, amounting to 39,700 ± 10,500 tons, stems from the dynamic replacement of soil inorganic carbon facilitated by atmospheric carbon. These results underscore the critical role of the dynamic replacement of soil inorganic carbon in altering the soil–atmosphere CO2 fluxes under water erosion, thereby influencing the carbon cycle dynamics. Consequently, we advocate for the integration of water erosion processes into regional carbon sink assessments to attain a more comprehensive understanding of regional carbon dynamics