5 research outputs found
A minimalistic approach for fast computation of geodesic distances on triangular meshes
The computation of geodesic distances is an important research topic in
Geometry Processing and 3D Shape Analysis as it is a basic component of many
methods used in these areas. In this work, we present a minimalistic parallel
algorithm based on front propagation to compute approximate geodesic distances
on meshes. Our method is practical and simple to implement and does not require
any heavy pre-processing. The convergence of our algorithm depends on the
number of discrete level sets around the source points from which distance
information propagates. To appropriately implement our method on GPUs taking
into account memory coalescence problems, we take advantage of a graph
representation based on a breadth-first search traversal that works
harmoniously with our parallel front propagation approach. We report
experiments that show how our method scales with the size of the problem. We
compare the mean error and processing time obtained by our method with such
measures computed using other methods. Our method produces results in
competitive times with almost the same accuracy, especially for large meshes.
We also demonstrate its use for solving two classical geometry processing
problems: the regular sampling problem and the Voronoi tessellation on meshes.Comment: Preprint submitted to Computers & Graphic
Dictionary Learning-based Inpainting on Triangular Meshes
The problem of inpainting consists of filling missing or damaged regions in
images and videos in such a way that the filling pattern does not produce
artifacts that deviate from the original data. In addition to restoring the
missing data, the inpainting technique can also be used to remove undesired
objects. In this work, we address the problem of inpainting on surfaces through
a new method based on dictionary learning and sparse coding. Our method learns
the dictionary through the subdivision of the mesh into patches and rebuilds
the mesh via a method of reconstruction inspired by the Non-local Means method
on the computed sparse codes. One of the advantages of our method is that it is
capable of filling the missing regions and simultaneously removes noise and
enhances important features of the mesh. Moreover, the inpainting result is
globally coherent as the representation based on the dictionaries captures all
the geometric information in the transformed domain. We present two variations
of the method: a direct one, in which the model is reconstructed and restored
directly from the representation in the transformed domain and a second one,
adaptive, in which the missing regions are recreated iteratively through the
successive propagation of the sparse code computed in the hole boundaries,
which guides the local reconstructions. The second method produces better
results for large regions because the sparse codes of the patches are adapted
according to the sparse codes of the boundary patches. Finally, we present and
analyze experimental results that demonstrate the performance of our method
compared to the literature
Robust estimation of bacterial cell count from optical density
Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data