Shapes of interacting RNA complexes

Shapes of interacting RNA complexes are studied using a filtration via their topological genus. A shape of an RNA complex is obtained by (iteratively) collapsing stacks and eliminating hairpin loops. This shape-projection preserves the topological core of the RNA complex and for fixed topological genus there are only finitely many such shapes.Our main result is a new bijection that relates the shapes of RNA complexes with shapes of RNA structures.This allows to compute the shape polynomial of RNA complexes via the shape polynomial of RNA structures. We furthermore present a linear time uniform sampling algorithm for shapes of RNA complexes of fixed topological genus.Comment: 38 pages 24 figure

Associations of Emergency Department Length of Stay With Publicly Reported Quality-of-care Measures.

OBJECTIVE: The Institute of Medicine identified emergency department (ED) crowding as a critical threat to patient safety. We assess the association between changes in publicly reported ED length of stay (LOS) and changes in quality-of-care measures in a national cohort of hospitals. METHODS: Longitudinal analysis of 2012 and 2013 data from the American Hospital Association (AHA) Survey, Center for Medicare and Medicaid Services (CMS) Cost Reports, and CMS Hospital Compare. We included hospitals reporting Hospital Compare timeliness measure of LOS for admitted patients. We used AHA and CMS data to incorporate hospital predictors of interest. We used the method of first differences to test for relationships in the change over time between timeliness measures and six hospital-level measures. RESULTS: The cohort consisted of 2,619 hospitals. Each additional hour of ED LOS was associated with a 0.7% decrease in proportion of patients giving a top satisfaction rating, a 0.7% decrease in proportion of patients who would definitely recommend the hospital, and a 6-minute increase in time to pain management for long bone fracture (p \u3c 0.01 for all). A 1-hour increase in ED LOS is associated with a 44% increase in the odds of having an increase in left without being seen (95% confidence interval = 25% to 68%). ED LOS was not associated with hospital readmissions (p = 0.14) or time to percutaneous coronary intervention (p = 0.14). CONCLUSION: In this longitudinal study of hospitals across the United States, improvements in ED timeliness measures are associated with improvements in the patient experience

Phase Transformations in Binary Colloidal Monolayers

Phase transformations can be difficult to characterize at the microscopic level due to the inability to directly observe individual atomic motions. Model colloidal systems, by contrast, permit the direct observation of individual particle dynamics and of collective rearrangements, which allows for real-space characterization of phase transitions. Here, we study a quasi-two-dimensional, binary colloidal alloy that exhibits liquid-solid and solid-solid phase transitions, focusing on the kinetics of a diffusionless transformation between two crystal phases. Experiments are conducted on a monolayer of magnetic and nonmagnetic spheres suspended in a thin layer of ferrofluid and exposed to a tunable magnetic field. A theoretical model of hard spheres with point dipoles at their centers is used to guide the choice of experimental parameters and characterize the underlying materials physics. When the applied field is normal to the fluid layer, a checkerboard crystal forms; when the angle between the field and the normal is sufficiently large, a striped crystal assembles. As the field is slowly tilted away from the normal, we find that the transformation pathway between the two phases depends strongly on crystal orientation, field strength, and degree of confinement of the monolayer. In some cases, the pathway occurs by smooth magnetostrictive shear, while in others it involves the sudden formation of martensitic plates.Comment: 13 pages, 7 figures. Soft Matter Latex template was used. Published online in Soft Matter, 201

Topological Photonic Phase in Chiral Hyperbolic Metamaterials

Recently the possibility of achieving one-way backscatter immune transportation of light by mimicking the topological order present within certain solid state systems, such as topological insulators, has received much attention. Thus far however, demonstrations of non-trivial topology in photonics have relied on photonic crystals with precisely engineered lattice structures, periodic on the scale of the operational wavelength and composed of finely tuned, complex materials. Here we propose a novel effective medium approach towards achieving topologically protected photonic surface states robust against disorder on all length scales and for a wide range of material parameters. Remarkably, the non-trivial topology of our metamaterial design results from the Berry curvature arising from the transversality of electromagnetic waves in a homogeneous medium. Our investigation therefore acts to bridge the gap between the advancing field of topological band theory and classical optical phenomena such as the Spin Hall effect of light. The effective medium route to topological phases will pave the way for highly compact one-way transportation of electromagnetic waves in integrated photonic circuits.Comment: 11 pages, 3 figures. To appear in PR

Vulnerabilities in first-generation RFID-enabled credit cards

Credit cards ; Radio frequency identification systems

The Harvard Crimson interviews Vinay Harpalani: ‘Complete Switch in Position’: Legal Experts Say Biden Likely to Back Harvard in Race-Conscious Admissions Suit

Many education and legal experts expect President-elect Joe Biden\u27s Justice Department will extend support to universities — including Harvard — currently embroiled in legal challenges from anti-affirmative action group Students for Fair Admissions. -- Vinay Harpalani, a law professor at the University of New Mexico, said he believes the Department of Justice will reverse course and file an amicus brief in support of Harvard if the case is appealed even further. “If the case goes to the U.S. Supreme Court, I would expect the Biden administration to file an amicus brief in favor of Harvard — so complete switch in position,” Harpalani said. Harpalani added that he believes Biden’s Justice Department will re-evaluate its ongoing investigations into alleged discrimination in admissions programs at highly-selective schools. “DOJ will be out of the Harvard and Yale investigation. So, [that is] one thing I expect to happen,” Harpalani said. “Number two: I expect Obama-era guidance on race-conscious admissions policies to be re-issued.