Simultaneous identification of long similar substrings in large sets of sequences-3

<p><b>Copyright information:</b></p><p>Taken from "Simultaneous identification of long similar substrings in large sets of sequences"</p><p>http://www.biomedcentral.com/1471-2105/8/S5/S7</p><p>BMC Bioinformatics 2007;8(Suppl 5):S7-S7.</p><p>Published online 24 May 2007</p><p>PMCID:PMC1892095.</p><p></p> and Sequence 2 are matching parts of the concatenated long sequences S that is stored in memory. The sliding window of length 10 is marked by grey colour

Simultaneous identification of long similar substrings in large sets of sequences-1

<p><b>Copyright information:</b></p><p>Taken from "Simultaneous identification of long similar substrings in large sets of sequences"</p><p>http://www.biomedcentral.com/1471-2105/8/S5/S7</p><p>BMC Bioinformatics 2007;8(Suppl 5):S7-S7.</p><p>Published online 24 May 2007</p><p>PMCID:PMC1892095.</p><p></p>w complexity subsequence section B. Removing A from AC146774 yields a perfect alignment with one mismatch

Simultaneous identification of long similar substrings in large sets of sequences-0

<p><b>Copyright information:</b></p><p>Taken from "Simultaneous identification of long similar substrings in large sets of sequences"</p><p>http://www.biomedcentral.com/1471-2105/8/S5/S7</p><p>BMC Bioinformatics 2007;8(Suppl 5):S7-S7.</p><p>Published online 24 May 2007</p><p>PMCID:PMC1892095.</p><p></p> (len2 = 298559 bp). The alignment has length aln = 105638 including 20 gaps in AC148340 and 9 gaps in AC148483. Its displayed part shows five clusters of mismatches surrounded by long perfect matches so that the number of errors does not exceed 10 in each window of size 40. Therefore, ClustDB does not look for improvements by introducing gaps and reports 69 errors, i.e. 16 errors more than the exact alignment computes. Note that each cluster of mismatches can be realigned with two gaps