Population structure, phenotypic information and association studies in long-generation crops

Poster presented at Generation Challenge Program Annual Research Meeting. Sao Paulo (Brazil), 12-16 Sep. 200

Resistance to the Whitefly, Aleurotrachelus socialis, in Wild Populations of Cassava, Manihot Tristis

The levels of resistance in the wild species of cassava, Manihot tristis Muell-Arg. (Malpighiales: Euphorbiaceae), to the whitefly, Aleurotrachelus socialis Bondar (Hemiptera: Alelyrodidae), the most important economic pest in cassava, Manihot esculenta Crantz (Malpighiales: Euphorbiaceae) crops in South America, were estimated under glasshouse conditions. The parameters of the life history of A. socialis were studied on TST-26 and TST-18 accessions of the wild parent and compared with the susceptible (CMC-40) and resistant (MEcu-72) cultivars. The average longevity on the wild accessions (TST-26, 4.1; TST-18, 4.6 days) and oviposition rates (TST-26, 2.0; TST-18, 1.6 eggs/female/2 days) of the A. socialis females were not significantly different from those of MEcu-72 (5.1 days and 3.4 eggs/female/2days). The longevity and oviposition rates on CMC-40 were highest (11 days and 8.6 eggs/female/2days). Analyses of the demographic parameters (Ro, rm; DT) showed a significant impact of the M. tristis accessions on the potential growth of A. socialis. The average survival time of adults that fed on TST-26, TST-18, and MEcu-72 were significantly different from those recorded on the susceptible genotype. Results from this study revealed important levels of resistance to the whitefly A. socialis on the TST-26 and TST-18 accessions due to the marked differences found for longevity and reproduction, which influenced and were consistent with the differences found in the net reproduction rate (Ro), intrinsic growth rate (rm) and population doubling time (DT). The combined effect of these parameters indicated that M. tristis accessions were inappropriate hosts for A. socialis

Detección de marcadores microsatélites asociados con la resistencia al añublo bacterial de la yuca (Manihot esculenta Crantz) en Colombia

Una de las principales estrategias para el manejo del Añublo Bacterial de la Yuca (CBB), causado por Xanthomonas axonopodis pv. manihotis es el uso de resistencia varietal, que implica desarrollar variedades de yuca con resistencia genética duradera. Para tal fin, es necesario conocer los genes que dominan la resistencia a la enfermedad, detectando inicialmente marcadores moleculares asociados con la respuesta fenotipica de la planta, siendo este el principal objetivo del presente estudio. Inicialmente, se evaluó la reacción a CBB de 4 familias de yuca BCI (retrocruce 1), se seleccionó la más segregante bajo presión natural de inóculo en Villavicencio (Meta, Colombia) y se confirmó la respuesta a CBB en condiciones de invernadero en CIAT (Palmira, Valle). La familia GM 315 presentó la mejor segregación, siendo la más adecuada para buscar asociación entre su reacción fenotípica y la presencia de un marcador molecular. Para esto, se evaluaron 486 cebadores microsatélites mediante análisis de grupos segregantes (BSA), encontrándose que 17 de ellos mostraron polimorfismo entre los grupos contrastantes y solo uno de ellos, el cebador SSRY 65, mostró diferencias significativas entre individuos resistentes y susceptibles. Al evaluar este cebador en toda la familia segregante se encontró asociación entre su presencia y los individuos evaluados fenotípicamente como resistentes en campo e invernadero, con una probabilidad mínima de P=0,OOl5 y P=0,OO7 respectivamente, en una prueba de Chicuadrado de independencia. Adicionalmente, a partir de los resultados obtenidos en el análisis estadístico, se calcularon los valores predictivos, especificidad y sensibilidad del marcador SSRY 65. Con base en los valores predictivos positivos generados, es posible sugerir la utilización de este marcador en pruebas diagnósticas para detectar la presencia de una banda específica en individuos resistentes de familias genéticamente relacionadas con la familia GM 315. = A major strategy for managing Cassava Bacterial blight (CBB), caused by Xanthomonas axonopodis pv. manihotis, is to use varietal resistance, that is, to develop cassava varieties with lasting genetic resistance. A search for the genes that dominate resistance to the disease was initially conducted by seeking the molecular markers associated with the plant s phenotypic response to CBB. The response in four BC1 (backcross 1) cassava families was accordingly evaluated under natural disease pressure at Villavicencio (Meta, Colombia). The most segregating family was then selected, and its response to CBB was verified under greenhouse conditions at CIAT (Palmira, Valle). Family GM 315 presented the best segregation, so, it was the most suitable for seeking association between its phenotypic reaction and the presence of a molecular marker. Of 486 microsatellite primers evaluated by bulked segregant analysis (BSA), 17 showed polymorphism among contrasting groups. Only one primer, SSRY 65, showed significant differences between resistant and susceptible individuals. On evaluating this primer for the entire segregating family, an association was found between its presence and individuals evaluated phenotypically as resistant in the field and greenhouse (minimum P = 0.0015 and P = 0.007, respectively, in a chi-square test of independence). With the results of the statistical analysis, the predictive values, specificity, and sensibility of marker SSRY 65 were calculated. The positive predictive values generated indicate that this marker can be used in diagnostic tests to detect the presence of a specific band in resistant individuals of families genetically related to the GM 315 family