On the thermodynamics of stress rate in the evolution of back stress in viscoplasticity

A thermodynamic foundation using the concept of internal state variables is presented for the kinematic description of a viscoplastic material. Three different evolution equations for the back stress are considered. The first is that of classical, nonlinear, kinematic hardening. The other two include a contribution that is linear in stress rate. Choosing an appropriate change in variables can remove this stress rate dependence. As a result, one of these two models is shown to be equivalent to the classical, kinematic hardening model; while the other is a new model, one which seems to have favorable characteristics for representing ratchetting behavior. All three models are thermodynamically admissible

Witten's Invariants of Rational Homology Spheres at Prime Values of KK and Trivial Connection Contribution

We establish a relation between the coefficients of asymptotic expansion of trivial connection contribution to Witten's invariant of rational homology spheres and the invariants that T.~Ohtsuki extracted from Witten's invariant at prime values of $K$. We also rederive the properties of prime $K$ invariants discovered by H.~Murakami and T.~Ohtsuki. We do this by using the bounds on Taylor series expansion of the Jones polynomial of algebraically split links, studied in our previous paper. These bounds are enough to prove that Ohtsuki's invariants are of finite type. The relation between Ohtsuki's invariants and trivial connection contribution is verified explicitly for lens spaces and Seifert manifolds.Comment: 32 pages, no figures, LaTe

On the Quantum Invariant for the Brieskorn Homology Spheres

We study an exact asymptotic behavior of the Witten-Reshetikhin-Turaev invariant for the Brieskorn homology spheres $\Sigma(p_1,p_2,p_3)$ by use of properties of the modular form following a method proposed by Lawrence and Zagier. Key observation is that the invariant coincides with a limiting value of the Eichler integral of the modular form with weight 3/2. We show that the Casson invariant is related to the number of the Eichler integrals which do not vanish in a limit $\tau\to N \in \mathbb{Z}$. Correspondingly there is a one-to-one correspondence between the non-vanishing Eichler integrals and the irreducible representation of the fundamental group, and the Chern-Simons invariant is given from the Eichler integral in this limit. It is also shown that the Ohtsuki invariant follows from a nearly modular property of the Eichler integral, and we give an explicit form in terms of the L-function.Comment: 26 pages, 2 figure

Corrections to scaling in multicomponent polymer solutions

We calculate the correction-to-scaling exponent $\omega_T$ that characterizes the approach to the scaling limit in multicomponent polymer solutions. A direct Monte Carlo determination of $\omega_T$ in a system of interacting self-avoiding walks gives $\omega_T = 0.415(20)$. A field-theory analysis based on five- and six-loop perturbative series leads to $\omega_T = 0.41(4)$. We also verify the renormalization-group predictions for the scaling behavior close to the ideal-mixing point.Comment: 21 page

Spatial Constraint Corrections to the Elasticity of dsDNA Measured with Magnetic Tweezers

In this paper, we have studied, within a discrete WLC model, the spatial constraints in magnetic tweezers used in single molecule experiments. Two elements are involved: first, the fixed plastic slab on which is stuck the initial strand, second, the magnetic bead which pulls (or twists) the attached molecule free end. We have shown that the bead surface can be replaced by its tangent plane at the anchoring point, when it is close to the bead south pole relative to the force. We are led to a model with two parallel repulsive plates: the fixed anchoring plate and a fluctuating plate, simulating the bead, in thermal equilibrium with the system. The bead effect is a slight upper shift of the elongation, about four times smaller than the similar effect induced by the fixed plate. This rather unexpected result, has been qualitatively confirmed within the soluble Gaussian model. A study of the molecule elongation versus the countour length exhibits a significant non-extensive behaviour. The curve for short molecules (with less than 2 kbp) is well fitted by a straight line, with a slope given by the WLC model, but it does not go through the origin. The non-extensive offset gives a 15% upward shift to the elongation of a 2 kbp molecule stretched by a 0.3 pN force.Comment: 28 pages, 6 figures An explanatory figure has been added. The physical interpretation of the results has been made somewhat more transparen

On the Quantum Invariant for the Spherical Seifert Manifold

We study the Witten--Reshetikhin--Turaev SU(2) invariant for the Seifert manifold $S^3/\Gamma$ where $\Gamma$ is a finite subgroup of SU(2). We show that the WRT invariants can be written in terms of the Eichler integral of the modular forms with half-integral weight, and we give an exact asymptotic expansion of the invariants by use of the nearly modular property of the Eichler integral. We further discuss that those modular forms have a direct connection with the polyhedral group by showing that the invariant polynomials of modular forms satisfy the polyhedral equations associated to $\Gamma$.Comment: 36 page

Cellular IP₆ Levels Limit HIV Production while Viruses that Cannot Efficiently Package IP₆ Are Attenuated for Infection and Replication

Summary: HIV-1 hijacks host proteins to promote infection. Here we show that HIV is also dependent upon the host metabolite inositol hexakisphosphate (IP6) for viral production and primary cell replication. HIV-1 recruits IP6 into virions using two lysine rings in its immature hexamers. Mutation of either ring inhibits IP6 packaging and reduces viral production. Loss of IP6 also results in virions with highly unstable capsids, leading to a profound loss of reverse transcription and cell infection. Replacement of one ring with a hydrophobic isoleucine core restores viral production, but IP6 incorporation and infection remain impaired, consistent with an independent role for IP6 in stable capsid assembly. Genetic knockout of biosynthetic kinases IPMK and IPPK reveals that cellular IP6 availability limits the production of diverse lentiviruses, but in the absence of IP6, HIV-1 packages IP5 without loss of infectivity. Together, these data suggest that IP6 is a critical cofactor for HIV-1 replication

Asymmetric Non-Abelian Orbifolds and Model Building

The rules for the free fermionic string model construction are extended to include general non-abelian orbifold constructions that go beyond the real fermionic approach. This generalization is also applied to the asymmetric orbifold rules recently introduced. These non-abelian orbifold rules are quite easy to use. Examples are given to illustrate their applications.Comment: 30 pages, Revtex 3.

Information Loss in Coarse Graining of Polymer Configurations via Contact Matrices

Contact matrices provide a coarse grained description of the configuration omega of a linear chain (polymer or random walk) on Z^n: C_{ij}(omega)=1 when the distance between the position of the i-th and j-th step are less than or equal to some distance "a" and C_{ij}(omega)=0 otherwise. We consider models in which polymers of length N have weights corresponding to simple and self-avoiding random walks, SRW and SAW, with "a" the minimal permissible distance. We prove that to leading order in N, the number of matrices equals the number of walks for SRW, but not for SAW. The coarse grained Shannon entropies for SRW agree with the fine grained ones for n <= 2, but differs for n >= 3.Comment: 18 pages, 2 figures, latex2e Main change: the introduction is rewritten in a less formal way with the main results explained in simple term