760 research outputs found
Augmenting graphs to minimize the diameter
We study the problem of augmenting a weighted graph by inserting edges of
bounded total cost while minimizing the diameter of the augmented graph. Our
main result is an FPT 4-approximation algorithm for the problem.Comment: 15 pages, 3 figure
Optimal Color Range Reporting in One Dimension
Color (or categorical) range reporting is a variant of the orthogonal range
reporting problem in which every point in the input is assigned a \emph{color}.
While the answer to an orthogonal point reporting query contains all points in
the query range , the answer to a color reporting query contains only
distinct colors of points in . In this paper we describe an O(N)-space data
structure that answers one-dimensional color reporting queries in optimal
time, where is the number of colors in the answer and is the
number of points in the data structure. Our result can be also dynamized and
extended to the external memory model
Efficient Dynamic Approximate Distance Oracles for Vertex-Labeled Planar Graphs
Let be a graph where each vertex is associated with a label. A
Vertex-Labeled Approximate Distance Oracle is a data structure that, given a
vertex and a label , returns a -approximation of
the distance from to the closest vertex with label in . Such
an oracle is dynamic if it also supports label changes. In this paper we
present three different dynamic approximate vertex-labeled distance oracles for
planar graphs, all with polylogarithmic query and update times, and nearly
linear space requirements
Dynamic Range Majority Data Structures
Given a set of coloured points on the real line, we study the problem of
answering range -majority (or "heavy hitter") queries on . More
specifically, for a query range , we want to return each colour that is
assigned to more than an -fraction of the points contained in . We
present a new data structure for answering range -majority queries on a
dynamic set of points, where . Our data structure uses O(n)
space, supports queries in time, and updates in amortized time. If the coordinates of the points are integers,
then the query time can be improved to . For constant values of , this improved query
time matches an existing lower bound, for any data structure with
polylogarithmic update time. We also generalize our data structure to handle
sets of points in d-dimensions, for , as well as dynamic arrays, in
which each entry is a colour.Comment: 16 pages, Preliminary version appeared in ISAAC 201
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Self-Limited versus Delayed Resolution of Acute Inflammation: Temporal Regulation of Pro-Resolving Mediators and MicroRNA
Mechanisms underlying delays in resolution programs of inflammation are of interest for many diseases. Here, we addressed delayed resolution of inflammation and identified specific microRNA (miR)-metabolipidomic signatures. Delayed resolution initiated by high-dose challenges decreased miR-219-5p expression along with increased leukotriene B4 (5-fold) and decreased (~3-fold) specialized pro-resolving mediators, e.g. protectin D1. Resolvin (Rv)E1 and RvD1 (1 nM) reduced miR-219-5p in human macrophages, not shared by RvD2 or PD1. Since mature miR-219-5p is produced from pre-miRs miR-219-1 and miR-219-2, we co-expressed in human macrophages a 5-lipoxygenase (LOX) 3′UTR-luciferase reporter vector together with either miR-219-1 or miR-219-2. Only miR-219-2 reduced luciferase activity. Apoptotic neutrophils administered into inflamed exudates in vivo increased miR-219-2-3p expression and PD1/NPD1 levels as well as decreased leukotriene B4. These results demonstrate that delayed resolution undermines endogenous resolution programs, altering miR-219-2 expression, increasing pro-inflammatory mediators and compromising SPM production that contribute to failed catabasis and homeostasis
Cross-Document Pattern Matching
We study a new variant of the string matching problem called cross-document
string matching, which is the problem of indexing a collection of documents to
support an efficient search for a pattern in a selected document, where the
pattern itself is a substring of another document. Several variants of this
problem are considered, and efficient linear-space solutions are proposed with
query time bounds that either do not depend at all on the pattern size or
depend on it in a very limited way (doubly logarithmic). As a side result, we
propose an improved solution to the weighted level ancestor problem
Lower bounds in the quantum cell probe model
We introduce a new model for studying quantum data structure problems --- the "quantum cell probe model". We prove a lower bound for the static predecessor problem in the 'address-only' version of this model where, essentially, we allow quantum parallelism only over the 'address lines' of the queries. This model subsumes the classical cell probe model, and many quantum query algorithms like Grover's algorithm fall into this framework. We prove our lower bound by obtaining a round elimination lemma for quantum communication complexity. A similar lemma was proved by Miltersen, Nisan, Safra and Wigderson for classical communication complexity, but their proof does not generalise to the quantum setting. We also study the static membership problem in the quantum cell probe model. Generalising a result of Yao, we show that if the storage scheme is 'implicit', that is it can only store members of the subset and 'pointers', then any quantum query scheme must make \Omega(\log n) probes. We also consider the one-round quantum communication complexity of set membership and show tight bounds
Fast Locality-Sensitive Hashing Frameworks for Approximate Near Neighbor Search
The Indyk-Motwani Locality-Sensitive Hashing (LSH) framework (STOC 1998) is a
general technique for constructing a data structure to answer approximate near
neighbor queries by using a distribution over locality-sensitive
hash functions that partition space. For a collection of points, after
preprocessing, the query time is dominated by evaluations
of hash functions from and hash table lookups and
distance computations where is determined by the
locality-sensitivity properties of . It follows from a recent
result by Dahlgaard et al. (FOCS 2017) that the number of locality-sensitive
hash functions can be reduced to , leaving the query time to be
dominated by distance computations and
additional word-RAM operations. We state this result as a general framework and
provide a simpler analysis showing that the number of lookups and distance
computations closely match the Indyk-Motwani framework, making it a viable
replacement in practice. Using ideas from another locality-sensitive hashing
framework by Andoni and Indyk (SODA 2006) we are able to reduce the number of
additional word-RAM operations to .Comment: 15 pages, 3 figure
String Indexing for Patterns with Wildcards
We consider the problem of indexing a string of length to report the
occurrences of a query pattern containing characters and wildcards.
Let be the number of occurrences of in , and the size of
the alphabet. We obtain the following results.
- A linear space index with query time .
This significantly improves the previously best known linear space index by Lam
et al. [ISAAC 2007], which requires query time in the worst case.
- An index with query time using space , where is the maximum number of wildcards allowed in the pattern.
This is the first non-trivial bound with this query time.
- A time-space trade-off, generalizing the index by Cole et al. [STOC 2004].
We also show that these indexes can be generalized to allow variable length
gaps in the pattern. Our results are obtained using a novel combination of
well-known and new techniques, which could be of independent interest
Dynamic Set Intersection
Consider the problem of maintaining a family of dynamic sets subject to
insertions, deletions, and set-intersection reporting queries: given , report every member of in any order. We show that in the word
RAM model, where is the word size, given a cap on the maximum size of
any set, we can support set intersection queries in
expected time, and updates in expected time. Using this algorithm
we can list all triangles of a graph in
expected time, where and
is the arboricity of . This improves a 30-year old triangle enumeration
algorithm of Chiba and Nishizeki running in time.
We provide an incremental data structure on that supports intersection
{\em witness} queries, where we only need to find {\em one} .
Both queries and insertions take O\paren{\sqrt \frac{N}{w/\log^2 w}} expected
time, where . Finally, we provide time/space tradeoffs for
the fully dynamic set intersection reporting problem. Using words of space,
each update costs expected time, each reporting query
costs expected time where
is the size of the output, and each witness query costs expected time.Comment: Accepted to WADS 201
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